View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4475-Insertion-3 (Length: 995)
Name: NF4475-Insertion-3
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475-Insertion-3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 5481531 - 5481095
Alignment:
| Q |
8 |
tggttttcatatttagtgtggattctcgagctagattagagccttcaatttgtcctatgtattttggaaattgtgttacaggccaaaaggttgttcttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5481531 |
tggttttcatatttagtgtggattctagagctagattagagccttcaatttctcctatgtattttggaaattgtgttacaggccaaaaggttgttcttga |
5481432 |
T |
|
| Q |
108 |
gacaaagaaattagttggaaaagatggatttttaagtgctttagaagggatgaatgaagctttgaataaggtcaaaaatgatggagtgttgaatggagct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
5481431 |
gacaaagaaattagttggaaaagatggatttttaagtgctttagaagggatgaatgaagctttgaataaggtaaaaaatgatggtgtgttgaatggagct |
5481332 |
T |
|
| Q |
208 |
aaaaattggttagctactatgttcaaaggtaaaaaggatgctaaaatttactctattgctggatcaccaaggtttgaggtttatagtattgattttggat |
307 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5481331 |
aaagattggttagctactatgttcaatggtaaaaaggatgctaaaatttactctattgctggatcaccaaggtttgaggtttatagtattgattttggat |
5481232 |
T |
|
| Q |
308 |
ttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcattttctattagtgaaagtaggaataacaatggtggaattgagattggttt |
407 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5481231 |
ttggaaagcctaaaaaagttgatatgacttcaactgataaaacaggagcattttctattagtgaaagtaggaataacaatggtggaattgagattggttt |
5481132 |
T |
|
| Q |
408 |
ggctttaggtaaggaagagatggaagctttttctacc |
444 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5481131 |
ggctttaggtaaggaagaaatggaagctttttctacc |
5481095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 40 - 444
Target Start/End: Original strand, 5494696 - 5495097
Alignment:
| Q |
40 |
agattagagccttcaatttgtcctatgtattttggaaattgtgttacaggccaaaaggttgttcttgagacaaagaaattagttggaaaagatggatttt |
139 |
Q |
| |
|
||||| || |||||||||| | |||||||| ||||||||||| || |||| |||||| |||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
5494696 |
agattggacccttcaatttctactatgtatattggaaattgtattgcaggacaaaagattgtgtttgagacaaagaacttagttggaaaaaatggatttt |
5494795 |
T |
|
| Q |
140 |
taagtgctttagaagggatgaatgaagctttgaataaggtcaaaaatgatggagtgttgaatggagctaaaaattggttagctactatgttcaaaggtaa |
239 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||||||| || ||| ||| ||||||||| ||||||||| |||||||| | ||| ||||| | || |
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|
| T |
5494796 |
taaatgctttagaagggataaataaagctttgaatagtgtgaaagatgttggagtgttaaatggagctgaaaattgggtttctaatatgtatagtgg--- |
5494892 |
T |
|
| Q |
240 |
aaaggatgctaaaatttactctattgctggatcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttca |
339 |
Q |
| |
|
| || | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||| |
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|
| T |
5494893 |
atttgaaggtaaaatttactctattgctggatcaccaaggtttgagttttatagtattgattttggatttggaaagccaaaaaaagttgacatgacttca |
5494992 |
T |
|
| Q |
340 |
actgataaaacaggagcattttctattagtgaaagtaggaataacaatggtggaattgagattggtttggctttaggtaaggaagagatggaagcttttt |
439 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
5494993 |
actgataaaacaggagcattttctcttggtgaaagtaggaataacaatggtggaattgagattggtttggctttaaataaggaagagttggaagcttttt |
5495092 |
T |
|
| Q |
440 |
ctacc |
444 |
Q |
| |
|
||||| |
|
|
| T |
5495093 |
ctacc |
5495097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 49 - 444
Target Start/End: Original strand, 5525634 - 5526026
Alignment:
| Q |
49 |
ccttcaatttgtcctatgtattttggaaattgtgttacaggccaaaaggttgttcttgagacaaagaaattagttggaaaagatggatttttaagtgctt |
148 |
Q |
| |
|
|||||||||| | |||||||| |||| |||||| || |||| ||||| |||| ||||||||||||| |||||||||||| |||||||| ||| ||||| |
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|
| T |
5525634 |
ccttcaatttctactatgtatattggtaattgtattgcaggaaaaaagattgtgtttgagacaaagaacttagttggaaaaaatggatttgtaaatgctt |
5525733 |
T |
|
| Q |
149 |
tagaagggatgaatgaagctttgaataaggtcaaaaatgatggagtgttgaatggagctaaaaattggttagctactatgttcaaaggtaaaaaggatgc |
248 |
Q |
| |
|
||||||| || ||| |||||||||||| || ||| ||| ||| ||||| ||||||||| |||||||| | ||| ||||| | || || ||| | |
|
|
| T |
5525734 |
tagaaggaataaataaagctttgaatagtgtgaaagatgttggcgtgttaaatggagctgaaaattgggtttctaatatgtctagtgg---aatggaagg |
5525830 |
T |
|
| Q |
249 |
taaaatttactctattgctggatcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaa |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5525831 |
taaaatttactctattgctggatcaccaaggtttgagttttatagtattgattttggatttggaaagccaaaaaaagttgatatgacttcaactgataaa |
5525930 |
T |
|
| Q |
349 |
acaggagcattttctattagtgaaagtaggaataacaatggtggaattgagattggtttggctttaggtaaggaagagatggaagctttttctacc |
444 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5525931 |
tcaggagcattttctcttagtgaaagtaggaataacaatggtggaattgagattggtttggctttaagtaaggaagagatggaagctttttctacc |
5526026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 592 - 760
Target Start/End: Complemental strand, 5480990 - 5480825
Alignment:
| Q |
592 |
aaattgcaagcattagcttatgttannnnnnnnncttacaaaatttgtaacatcacaaaatatcattataataatataa-catctagagactt--cttag |
688 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
5480990 |
aaattgcaagcattagcttattttatttttttatcttacaaaatttgtaacatcacaaa-tataattataataatgtaagcatctagagactctacttag |
5480892 |
T |
|
| Q |
689 |
ccagagagtactctttggaagatgcattctattctatttatttattctaatttatttgtgtaatttaagttt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
5480891 |
ccagagagtactctttggaagatgcattctatt-----tattgattctaatttatttgtgtaatttaagttt |
5480825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 259 - 413
Target Start/End: Complemental strand, 4981913 - 4981759
Alignment:
| Q |
259 |
tctattgctggatcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcat |
358 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||||||| |||||||||||| || || ||||||||||||||| | ||||| | ||||||||||||||| | |
|
|
| T |
4981913 |
tctattgccgggtcacctaggtttgatgtttatagttttgattttggatggggtaaacctaagaaagttgatgttacttctattgataaaacaggagctt |
4981814 |
T |
|
| Q |
359 |
tttctattagtgaaagtaggaataacaatggtggaattgagattggtttggcttt |
413 |
Q |
| |
|
||||| || || | ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4981813 |
tttctctttcggagaataggaataatgatggtggaattgagattggtttggcttt |
4981759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 259 - 363
Target Start/End: Complemental strand, 4977803 - 4977699
Alignment:
| Q |
259 |
tctattgctggatcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcat |
358 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||| |||||||||||| || || ||||||||||||||| | ||||| | ||||||||||||||| | |
|
|
| T |
4977803 |
tctattgcaggatcacctagatttgaggtttatagttttgattttggatggggtaaacctaagaaagttgatgttacttctattgataaaacaggagctt |
4977704 |
T |
|
| Q |
359 |
tttct |
363 |
Q |
| |
|
||||| |
|
|
| T |
4977703 |
tttct |
4977699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 812 - 950
Target Start/End: Complemental strand, 5480768 - 5480629
Alignment:
| Q |
812 |
gattctcatgaactggtgcgtacaaattgcacaaccatcaggtgcaaaaggctctcatcaaatggcgtttaag-aggctgttttaacgatttgaactcgt |
910 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| ||||||| | ||||| | |||||| | |||||| ||||||||||||| ||||||||| || |
|
|
| T |
5480768 |
gattctcatgaactggtgcatacaaatttcacaatcatagggtgcaagatgctctgaccaaatgccatttaaggaggctgttttaacaatttgaacttgt |
5480669 |
T |
|
| Q |
911 |
ggcaataacattaccattgcatcaaggctggtaacgagtg |
950 |
Q |
| |
|
|||||||| ||||||| | | ||||||| |||| ||||| |
|
|
| T |
5480668 |
tgcaataaccttaccatagtaacaaggctcgtaatgagtg |
5480629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 271 - 413
Target Start/End: Complemental strand, 4994546 - 4994404
Alignment:
| Q |
271 |
tcaccaaggtttgaggtttatagtattgattttggatttggaaagcctaagaaagttgatatgacttcaactgataaaacaggagcattttctattagtg |
370 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||| | || |||||||||||||||||| | ||||| ||||| | ||||||| |||| | || | |
|
|
| T |
4994546 |
tcacctaggtttgaggtgtatagttttgattttgggtggggtaagcctaagaaagttgatgttacttcggttgatagaccaggagctttttatctttcgg |
4994447 |
T |
|
| Q |
371 |
aaagtaggaataacaatggtggaattgagattggtttggcttt |
413 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
4994446 |
gaaataggaataatgatggtggaattgagattggtttgacttt |
4994404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 509 - 558
Target Start/End: Complemental strand, 5481037 - 5480988
Alignment:
| Q |
509 |
ggaagcataattgtttgaatatgattcaggcaatttgtgttagggagaaa |
558 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
5481037 |
ggaagcatgattgtttgaatatgattcaggtattttgtgttagggagaaa |
5480988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 4297742 - 4297693
Alignment:
| Q |
280 |
tttgaggtttatagtattgattttggatttggaaagcctaagaaagttga |
329 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| || ||||||||||| |
|
|
| T |
4297742 |
tttgaggtttatagtactgattttggatgtggaaaaccaaagaaagttga |
4297693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 4261030 - 4261079
Alignment:
| Q |
280 |
tttgaggtttatagtattgattttggatttggaaagcctaagaaagttga |
329 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| || || |||||||| |
|
|
| T |
4261030 |
tttgaggtttatagtactgattttggatgtggaaaaccaaaaaaagttga |
4261079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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