View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4475-Insertion-4 (Length: 989)

Name: NF4475-Insertion-4
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4475-Insertion-4
NF4475-Insertion-4
[»] chr4 (23 HSPs)
chr4 (8-904)||(20872222-20873121)
chr4 (18-551)||(9886118-9886644)
chr4 (553-904)||(9886686-9887028)
chr4 (548-721)||(22201184-22201356)
chr4 (287-721)||(10057116-10057557)
chr4 (606-904)||(13267830-13268126)
chr4 (460-646)||(14185700-14185892)
chr4 (606-721)||(18554892-18555006)
chr4 (654-717)||(12230684-12230747)
chr4 (607-712)||(15888710-15888814)
chr4 (28-83)||(13560336-13560391)
chr4 (606-712)||(15871135-15871239)
chr4 (654-717)||(13559545-13559608)
chr4 (641-777)||(13235092-13235225)
chr4 (403-497)||(18555298-18555392)
chr4 (744-800)||(17419426-17419483)
chr4 (744-903)||(19727540-19727701)
chr4 (863-903)||(13559373-13559413)
chr4 (625-679)||(19727762-19727817)
chr4 (863-904)||(15870953-15870994)
chr4 (459-516)||(18321772-18321829)
chr4 (459-516)||(18453117-18453174)
chr4 (281-330)||(19727877-19727926)
[»] chr5 (17 HSPs)
chr5 (159-939)||(24564276-24565049)
chr5 (159-939)||(24605310-24606084)
chr5 (281-916)||(13938455-13939079)
chr5 (403-841)||(25581400-25581836)
chr5 (402-716)||(32948408-32948721)
chr5 (8-104)||(17459252-17459348)
chr5 (388-510)||(25581920-25582042)
chr5 (28-83)||(25582260-25582315)
chr5 (28-83)||(23908067-23908122)
chr5 (745-818)||(32948760-32948833)
chr5 (8-67)||(24760370-24760429)
chr5 (655-719)||(14137809-14137873)
chr5 (654-717)||(23909038-23909101)
chr5 (745-800)||(14137898-14137952)
chr5 (141-203)||(24144491-24144553)
chr5 (636-721)||(25791666-25791750)
chr5 (744-800)||(25791773-25791830)
[»] scaffold0381 (2 HSPs)
scaffold0381 (18-551)||(11900-12426)
scaffold0381 (553-904)||(11516-11858)
[»] scaffold0174 (1 HSPs)
scaffold0174 (44-721)||(12834-13519)
[»] scaffold0074 (1 HSPs)
scaffold0074 (18-721)||(1109-1820)
[»] chr2 (11 HSPs)
chr2 (445-921)||(22497189-22497655)
chr2 (12-523)||(22497663-22498166)
chr2 (298-635)||(20915760-20916105)
chr2 (287-721)||(27472897-27473338)
chr2 (388-721)||(34858362-34858701)
chr2 (388-721)||(34873424-34873763)
chr2 (745-932)||(29718075-29718262)
chr2 (606-720)||(18985404-18985517)
chr2 (660-721)||(26861388-26861449)
chr2 (762-842)||(24788461-24788540)
chr2 (657-717)||(13361844-13361904)
[»] scaffold0207 (2 HSPs)
scaffold0207 (407-811)||(838-1241)
scaffold0207 (403-510)||(1329-1436)
[»] chr7 (13 HSPs)
chr7 (18-721)||(11090827-11091529)
chr7 (406-635)||(46579976-46580212)
chr7 (606-721)||(11800151-11800265)
chr7 (283-536)||(48812478-48812732)
chr7 (335-502)||(11310001-11310169)
chr7 (28-83)||(9693959-9694014)
chr7 (654-717)||(9693168-9693231)
chr7 (8-83)||(11801147-11801222)
chr7 (298-476)||(16379627-16379806)
chr7 (8-97)||(12346842-12346931)
chr7 (744-800)||(16068169-16068226)
chr7 (863-903)||(9692996-9693036)
chr7 (755-842)||(23089191-23089277)
[»] scaffold0364 (4 HSPs)
scaffold0364 (393-698)||(14168-14472)
scaffold0364 (287-495)||(13880-14079)
scaffold0364 (746-811)||(14523-14588)
scaffold0364 (863-904)||(14629-14670)
[»] scaffold0153 (2 HSPs)
scaffold0153 (287-721)||(11761-12202)
scaffold0153 (287-721)||(4741-5182)
[»] chr1 (8 HSPs)
chr1 (28-258)||(17450882-17451114)
chr1 (657-901)||(17451265-17451509)
chr1 (590-721)||(15544090-15544220)
chr1 (8-132)||(31343289-31343413)
chr1 (606-721)||(21496366-21496480)
chr1 (210-356)||(20761652-20761798)
chr1 (744-800)||(21496509-21496565)
chr1 (459-554)||(17451123-17451218)
[»] scaffold0686 (1 HSPs)
scaffold0686 (394-793)||(988-1391)
[»] scaffold0032 (1 HSPs)
scaffold0032 (287-721)||(67738-68179)
[»] chr6 (11 HSPs)
chr6 (298-720)||(27851658-27852087)
chr6 (606-721)||(19545316-19545430)
chr6 (406-721)||(20733414-20733735)
chr6 (65-226)||(10905669-10905833)
chr6 (403-497)||(19545722-19545816)
chr6 (625-721)||(22395628-22395723)
chr6 (28-134)||(8402850-8402956)
chr6 (169-226)||(19326523-19326580)
chr6 (657-717)||(1254669-1254729)
chr6 (610-717)||(14746370-14746476)
chr6 (863-904)||(22395465-22395506)
[»] scaffold0290 (1 HSPs)
scaffold0290 (625-811)||(11935-12118)
[»] chr3 (18 HSPs)
chr3 (608-720)||(27868450-27868561)
chr3 (287-721)||(52989028-52989469)
chr3 (654-717)||(10302601-10302664)
chr3 (606-721)||(22161555-22161669)
chr3 (625-721)||(21999379-21999474)
chr3 (460-536)||(3264275-3264351)
chr3 (335-502)||(3264502-3264670)
chr3 (625-717)||(21976948-21977039)
chr3 (335-484)||(36528208-36528358)
chr3 (625-717)||(19186626-19186717)
chr3 (654-717)||(10340927-10340990)
chr3 (466-635)||(14966801-14966977)
chr3 (607-712)||(16358007-16358111)
chr3 (8-81)||(21101470-21101543)
chr3 (460-635)||(36528527-36528707)
chr3 (8-80)||(5942515-5942587)
chr3 (863-921)||(16357810-16357867)
chr3 (863-904)||(10302785-10302826)
[»] chr8 (11 HSPs)
chr8 (287-635)||(19807649-19808005)
chr8 (287-635)||(22237305-22237662)
chr8 (388-717)||(21321322-21321656)
chr8 (670-800)||(15727628-15727756)
chr8 (388-533)||(21326109-21326254)
chr8 (658-800)||(1683092-1683232)
chr8 (661-721)||(19862149-19862209)
chr8 (661-721)||(19866786-19866846)
chr8 (556-635)||(21326000-21326080)
chr8 (657-717)||(26859384-26859444)
chr8 (661-708)||(10454273-10454320)
[»] scaffold0395 (1 HSPs)
scaffold0395 (287-620)||(11341-11682)
[»] scaffold0385 (2 HSPs)
scaffold0385 (630-800)||(15980-16147)
scaffold0385 (863-921)||(16211-16269)
[»] scaffold0118 (1 HSPs)
scaffold0118 (606-721)||(11779-11893)
[»] scaffold0094 (2 HSPs)
scaffold0094 (606-721)||(2671-2785)
scaffold0094 (403-497)||(3078-3172)
[»] scaffold1405 (2 HSPs)
scaffold1405 (388-510)||(1305-1427)
scaffold1405 (28-83)||(953-1008)
[»] scaffold0007 (1 HSPs)
scaffold0007 (24-83)||(172897-172956)
[»] scaffold0010 (1 HSPs)
scaffold0010 (744-811)||(143048-143116)
[»] scaffold0166 (1 HSPs)
scaffold0166 (8-67)||(2867-2926)
[»] scaffold1559 (1 HSPs)
scaffold1559 (182-224)||(882-924)
[»] scaffold0170 (1 HSPs)
scaffold0170 (744-800)||(18097-18154)
[»] scaffold0048 (1 HSPs)
scaffold0048 (30-159)||(53332-53463)
[»] scaffold0481 (1 HSPs)
scaffold0481 (661-700)||(11436-11475)
[»] scaffold0408 (1 HSPs)
scaffold0408 (610-717)||(14806-14912)


Alignment Details
Target: chr4 (Bit Score: 701; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 8 - 904
Target Start/End: Complemental strand, 20873121 - 20872222
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  20873121 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacacttcctcatttacgtgtatagtttaaggactcatactttaaatctacac 20873022  T
Q  108 gctaacggcttgcttaaactcactaatgcactca--gatattttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccaca 205  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||     
T  20873021 gctaacggattgcttaaactcactaatgcactcatagatattttagagtccacttaaagggtgatgctgaagttttatggaaaacgaagcatgacccacg 20872922  T
Q  206 tgcagtattttaatcataactaaacatctaaaaatgtaaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagaca 305  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||    
T  20872921 tgcagtattttaatcataactaaacttctaaaaatttaaatggagtccaaccaaaaccaactgaaagttagaaaccatatatacaacttttatgaagaca 20872822  T
Q  306 cccaaat---ctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcctt-ctgaaccctttgtg 401  Q
    ||| |||   ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  20872821 ccctaataatctaattcgggacaaaaaatggcagaaaagatgattttcctaagcttagggaaaaagcacgaccttgttgatccctgctgaaccctttgtg 20872722  T
Q  402 gtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacaccta 501  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  20872721 gtattttgatcatatattgagatctagatgcttaaatcaagttcctccaaaggctagtgaaacctaacatccatatctacaatgttcatgaagacaccta 20872622  T
Q  502 aacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaaccctt 601  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20872621 aacccaattcagaacttaaacttgtcaaactaagagagtaagaaacgcacggtgacagcaaaattgcagttgtgctgcgatttcgctttggggaaccctt 20872522  T
Q  602 ttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctacca 701  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20872521 ttcgactccgttttcgatcatgtactctccaaactcgaccctaatattcacttccatgattaccctatcattcaaacactaattcttcgttaacctacca 20872422  T
Q  702 gattatccactctttttaagtcnnnnnnncttaattcaaagtactaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcg 801  Q
    ||||||||||||||||||||||       || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20872421 gattatccactctttttaagtcaaaaaaactcaattcaaagtactaaactagttttcctcaattatgatatttcaacttcatcttttaattcgttcatcg 20872322  T
Q  802 taaatctctcctcacaaatctcacataataacaacaacatcatatttaagaagtaaacaaccccatcatatattaagatactcaaaagtgcaaagattct 901  Q
    |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||||   |||||||||||||||| ||||||||||||||||||    
T  20872321 taaatctctcatcac-aatctcacataataacaacaacatcata-ttaagaagtaaa-aaccatgtcatatattaagatacccaaaagtgcaaagattct 20872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 18 - 551
Target Start/End: Original strand, 9886118 - 9886644
Alignment:
Q  18 tatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggct 117  Q
    |||| |||| ||||||||| || || |||| ||||||||||||| || |||||||| |||||||||||||  | |||||| | |||||| |||||  |||    
T  9886118 tattaccttgaggtaatcaattatatttatccctaaacacacttccttatttagatatatagtttaaggaaccttacttttactctacatgctaagagct 9886217  T
Q  118 tgcttaaactcactaatgcactca--gatattttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtattt 215  Q
    || |||||||||||||||  ||||  ||| |||||||||||| | ||| ||| |||||||| ||| ||||||| |||||||||||  ||||||  |||||    
T  9886218 tgattaaactcactaatgttctcatagatgttttagagtccattgaaagggttatgctgaaatttcatggaaagcgcagcatgacgtacatgctttattt 9886317  T
Q  216 taatcataactaaacatctaaaaatgtaaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagacacccaaatcta 315  Q
    ||||||||| | ||  ||||||||| ||||||||||||||||| ||  || | |||  |   ||  || | |||||||||  |||| || |||||| |||    
T  9886318 taatcataagtcaagttctaaaaatttaaatggagtccaaccaaaataaaataaaaaatcacaattatgtctacaactttcatgaatactcccaaaccta 9886417  T
Q  316 attcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatccttctgaaccctttgtggtattttgatcata 415  Q
    |||| | | | ||| ||||||||||||||||||||||||| || |||||||||||| |||||||||| |||         | ||| ||||||||||||||    
T  9886418 attcagaaaagaaagtggtagaaaagttgattttcctaagtttggggaaaaagcacaaccttgttgaccct---------tgtgtagtattttgatcata 9886508  T
Q  416 tattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaa 515  Q
    | ||||  |||||||  ||||||  ||||| || |||||||||||||| |||||||||||| ||||||  ||||| ||||||||||||||||||||| ||    
T  9886509 tcttgatttctagatttttaaattgagtccatctaaaggctagtgaaaactaacatccatatctacaaattttataaagacacctaaacccaattcataa 9886608  T
Q  516 cttaaacttgtcaaactgagagagtaagaaacgcac 551  Q
    |||||||||| ||||||||||  |||||||||||||    
T  9886609 cttaaacttgccaaactgagacggtaagaaacgcac 9886644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 553 - 904
Target Start/End: Original strand, 9886686 - 9887028
Alignment:
Q  553 gtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcac 652  Q
    |||||||||||||| ||||| | |  ||||||||| |||| |||||||||| ||| |||||||||||| | || |||||||||||  || |||| |||||    
T  9886686 gtgacagcaaaatcacagttctaca-cgatttcgccttggagaaccctttttgacaccgttttcgatcctatattctccaaactcggccgtaatcttcac 9886784  T
Q  653 ttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtc-nnnnnnncttaattcaaagtactaaact 751  Q
     | |||||||| | |||| || ||||| |||||||| |||||| |||| |||||||||||| ||||||| |        || ||||||||    ||||||    
T  9886785 ct-catgattatcttatcgttgaaacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaact 9886883  T
Q  752 agttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatcatatttaag 851  Q
    ||||||| |||||||| || ||||| || |||||||||||||||| ||| |||||||||| |||| |||||||||| |||||| ||||       |||||    
T  9886884 agttttcttcaattctcatctttcatctgcatcttttaattcgtttatcataaatctctcatcac-aatctcacatcataacatcaac-------ttaag 9886975  T
Q  852 aagtaaacaaccccatcatatattaagatactcaaaagtgcaaagattctccc 904  Q
    || |||||| |||| |||||||||||||||| | |||||||||||||||||||    
T  9886976 aaataaacacccccgtcatatattaagataccctaaagtgcaaagattctccc 9887028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 548 - 721
Target Start/End: Original strand, 22201184 - 22201356
Alignment:
Q  548 gcacggtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaata 647  Q
    |||| |||||| ||||||||| ||| ||||| ||||| || || ||| |||||||||||||||||||||||| || |||||||||||||  ||||||| |    
T  22201184 gcacagtgacaacaaaatcgcggttttgctgtgattttgccttaggggacccttttcgactccgttttcgattatatactctccaaacttgaccctaaaa 22201283  T
Q  648 ttcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    ||||  || |||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  22201284 ttcatctc-atgactaccctatcatttaaacactaattcttcgttaacctaccagattatcaactctttttaag 22201356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 287 - 721
Target Start/End: Original strand, 10057116 - 10057557
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    ||||||||| |||||||| |||||| ||||||| | ||| |||||   ||||||||||||||||||| |||  || ||| || |||||  || ||||||     
T  10057116 tacaactttggtgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccc 10057215  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| |||| ||| ||| ||||||||||| ||||| ||||  |||||||||| ||| |||| |||| | ||||| |  ||||||||||| |||||||     
T  10057216 tgctgacccctgtgtagtaatttgatcatatcttgagttctatgtgcttaaatcgagtgcctcaaaagccgagtgacagataacatccatatctacaact 10057315  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctg 578  Q
    ||  | ||| |||||||||||| |||  || |||||||||||||||||||| | ||| ||||       ||||  |||||||||||||||||||  | ||    
T  10057316 ttcgttaaggcacctaaacccagttcgaaatttaaacttgtcaaactgagacaataa-aaacgcgttttgcacactgacagcaaaatcgcagttcagttg 10057414  T
Q  579 cgatttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaa 677  Q
    |||||||| ||||||||||  ||||||||||||||||||||||   ||||||||||||  |||| ||||  | ||  | ||||| |||||||||||  ||    
T  10057415 cgatttcgcctttggggaaatcttttcgactccgttttcgatccgatactctccaaacataaccataatcattac-cctatgatcaccctatcattataa 10057513  T
Q  678 cattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    |  ||||| ||| | |||||||   |||||||||||||||||||    
T  10057514 ctctaattattcatcaacctactgtattatccactctttttaag 10057557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 606 - 904
Target Start/End: Original strand, 13267830 - 13268126
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||||| |||||||| |||||| |||||| |||||||||||||||| | |||||||||||||||||||| ||||    
T  13267830 actccgttttcgaccctaaactcaccaaactcgaccctaatcttcact-ccatgactaccctatcattcaaaaactaattcttcgttaacctacctgatt 13267928  T
Q  706 atccactctttttaagtcnnnnnnncttaattcaaagtactaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaa 805  Q
    ||||||| |||||||| |       || ||||||||   ||||||||||||| ||||||| | || |||||||||||||||| |||||||||||| | |     
T  13267929 atccactttttttaagac--taaaactcaattcaaaaatctaaactagttttactcaattgtcatctttcaacttcatctttcaattcgttcatcatcat 13268026  T
Q  806 tctctcctcacaaatctcacataataacaacaacatcatatttaa---gaagtaaacaaccccatcatatattaagatactcaaaagtgcaaagattctc 902  Q
    |||||| ||| |||| |||||| ||||||||||||   |||| ||    ||| ||||   ||||||||| |||||||||| | |||||||||||||||||    
T  13268027 tctctcgtca-aaat-tcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaagattctc 13268124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 460 - 646
Target Start/End: Original strand, 14185700 - 14185892
Alignment:
Q  460 gaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacg 552  Q
    |||| |||||||||||| ||||||| ||  ||||||| |||||||||| |||||| ||||||||||||||||||||| | ||| ||||       ||||     
T  14185700 gaaagctaacatccatacctacaactttcgtgaagactcctaaacccagttcagaccttaaacttgtcaaactgagacaataa-aaacgcgttttgcaca 14185798  T
Q  553 gtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaat 646  Q
     |||||||||||||||||||  ||||||||||||| ||||||||  |||||||||| |||||||||||   |||| ||||||||  ||||||||    
T  14185799 ctgacagcaaaatcgcagttcagctgcgatttcgccttggggaaatcttttcgacttcgttttcgatccaatactttccaaacttgaccctaat 14185892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 606 - 721
Target Start/End: Complemental strand, 18555006 - 18554892
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||| | |||||||| |||||| |||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  18555006 actccgttttcgaccctaaactcgccaaacccgaccctaatcttcact-ccatcatcaccctatcattcaaacactaattcttcgttaacctaccagatt 18554908  T
Q  706 atccactctttttaag 721  Q
    ||||||||||||||||    
T  18554907 atccactctttttaag 18554892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 654 - 717
Target Start/End: Original strand, 12230684 - 12230747
Alignment:
Q  654 tccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12230684 tccatgattaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttt 12230747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 607 - 712
Target Start/End: Complemental strand, 15888814 - 15888710
Alignment:
Q  607 ctccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatta 706  Q
    |||||||||||| | |  |||| |||||||| |||||||| |||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |||||    
T  15888814 ctccgttttcgaccctaaactcgccaaactcgaccctaatcttcact-ccatgactaccctatcattgaaacactaattcttcgttaacctacctgatta 15888716  T
Q  707 tccact 712  Q
    ||||||    
T  15888715 tccact 15888710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 13560391 - 13560336
Alignment:
Q  28 aggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagttta 83  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  13560391 aggtaatcacttctatttatgcctaaacacactttctcatttagatatatagttta 13560336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 606 - 712
Target Start/End: Complemental strand, 15871239 - 15871135
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||||| |||||||| |||||| |||||| |||||||||||| ||||| |||||||| ||||||||||| ||||    
T  15871239 actccgttttcgaccctaaactcgccaaactcgaccctaatcttcact-ccatgactaccctatcattgaaacactaattctt-gttaacctacctgatt 15871142  T
Q  706 atccact 712  Q
    |||||||    
T  15871141 atccact 15871135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 654 - 717
Target Start/End: Complemental strand, 13559608 - 13559545
Alignment:
Q  654 tccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    |||||||||||||||||||||||| |  |||| ||| |||||||||||||||||||||||||||    
T  13559608 tccatgattaccctatcattcaaataccaattattcattaacctaccagattatccactctttt 13559545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 641 - 777
Target Start/End: Original strand, 13235092 - 13235225
Alignment:
Q  641 cctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtcnnnnnnncttaattcaa 740  Q
    |||||| |||||| |||||| |||||||||||||| ||| ||||| ||||||||||||||  | ||||||||||||||||| |       || |||||||    
T  13235092 cctaatcttcact-ccatgactaccctatcattcatacactaattattcgttaacctaccgaaatatccactctttttaagac--taaaactcaattcaa 13235188  T
Q  741 agtactaaactagttttcctcaattctgatatttcaa 777  Q
    |   ||||||| ||||||||||||||| |||||||||    
T  13235189 aaacctaaactggttttcctcaattctcatatttcaa 13235225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 403 - 497
Target Start/End: Complemental strand, 18555392 - 18555298
Alignment:
Q  403 tattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagaca 497  Q
    |||||| ||||||| ||||| | ||||| |||||||  ||||||||||||||||||||||| |||||||| ||| |||| || || |||||||||    
T  18555392 tattttcatcatatcttgagttatagatacttaaatagagtccctccaaaggctagtgaaagctaacatcgatatctaccactttcatgaagaca 18555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 744 - 800
Target Start/End: Original strand, 17419426 - 17419483
Alignment:
Q  744 actaaactagttttcctcaattctgatatttcaacttcatctttt-aattcgttcatc 800  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  17419426 actaaactagttttcctcaattctcatctttcaacttcatcttttcaattcgttcatc 17419483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 744 - 903
Target Start/End: Complemental strand, 19727701 - 19727540
Alignment:
Q  744 actaaactagttttcctcaattctgatatttcaacttcatctttt-aattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatc 842  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||| | | |||||| ||| |||| |||||| ||||||  |||| |    
T  19727701 actaaactagttttcctcaattctcatctttcaacttcatcttttcaatttgttcatcatcattctctcgtca-aaat-tcacatcataacagtaacaac 19727604  T
Q  843 atatttaagaagtaa-acaac---cccatcatatattaagatactcaaaagtgcaaagattctcc 903  Q
    || ||||| |  ||| |||||   ||| ||||| |||||||||| | ||||||||||||||||||    
T  19727603 at-tttaaaatttaagacaaccctcccgtcatagattaagataccctaaagtgcaaagattctcc 19727540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 863 - 903
Target Start/End: Complemental strand, 13559413 - 13559373
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctcc 903  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  13559413 cccatcatagattaagatactctaaagtgcaaagattctcc 13559373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 679
Target Start/End: Complemental strand, 19727817 - 19727762
Alignment:
Q  625 actctccaaactcaaccctaatattcact-tccatgattaccctatcattcaaaca 679  Q
    |||| |||||||| |||||||| |||||| |||||||||| |||||||||||||||    
T  19727817 actcgccaaactcgaccctaatcttcactctccatgattaacctatcattcaaaca 19727762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 15870994 - 15870953
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctccc 904  Q
    ||||||||| |||||||||| | |||||||||||||||||||    
T  15870994 cccatcataaattaagataccctaaagtgcaaagattctccc 15870953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 18321829 - 18321772
Alignment:
Q  459 tgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaac 516  Q
    ||||| |||||||||||| ||||||  || ||||||||||||||| ||||||| ||||    
T  18321829 tgaaagctaacatccatatctacaattttcatgaagacacctaaatccaattcggaac 18321772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 459 - 516
Target Start/End: Original strand, 18453117 - 18453174
Alignment:
Q  459 tgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaac 516  Q
    ||||| |||||||||||| ||||||  || ||||||||||||||| ||||||| ||||    
T  18453117 tgaaagctaacatccatatctacaattttcatgaagacacctaaatccaattcggaac 18453174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 19727926 - 19727877
Alignment:
Q  281 catatatacaacttttgtgaagacacccaaatctaattcgggacaaaaaa 330  Q
    ||||| |||||||||| |||||||||||||  ||||||||| ||||||||    
T  19727926 catatctacaacttttatgaagacacccaatcctaattcggaacaaaaaa 19727877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 159 - 939
Target Start/End: Original strand, 24564276 - 24565049
Alignment:
Q  159 ttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtattttaatcataactaaacatctaaaaatgtaaatggagtccaacca 258  Q
    ||||| ||| |||||||| ||| |||||||||||||||||||  |||||  ||||||||||||||| ||||  ||||||||| |||||||||||||||||    
T  24564276 ttaaaaggttatgctgaattttcatggaaaacgcagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaacca 24564375  T
Q  259 gaaccaattgaaagttagaaaccatatatacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagctt 358  Q
     ||  || |||||| ||  |||||||||||||||||   ||||| | | |||| ||||||||  ||| | ||||||||||||||||||||||||| || |    
T  24564376 aaagaaactgaaagctaacaaccatatatacaacttcgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggc-t 24564474  T
Q  359 agggaaaaagcacgaccttgttgat-ccttctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggcta 457  Q
    ||||||||||||| |||||| |||| ||  |||| |||| ||| ||||||||||||||||||||  |||||||||||||||| ||||||| |||||| |     
T  24564475 agggaaaaagcacaaccttgctgatcccagctgatccctgtgtagtattttgatcatatattgaattctagatgcttaaatcgagtcccttcaaaggttg 24564574  T
Q  458 gtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtgac 557  Q
    |||||| |||||||||||| ||||||| ||| |||| ||||||||| ||| ||||||||||||| ||| ||||     | | ||| ||||||||||||||    
T  24564575 gtgaaa-ctaacatccatatctacaacttttgtgaatacacctaaatccatttcagaacttaaagttgccaaa-----acattaataaacgcacggtgac 24564668  T
Q  558 agcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttcca 657  Q
    ||||||||||||||| | |||||||||  ||||||||||||||||| |||||||||||||||||| ||||||| ||| ||  ||||||| || | | |||    
T  24564669 agcaaaatcgcagttcttctgcgatttaactttggggaaccctttttgactccgttttcgatcatatactctctaaaatcggccctaatcttta-tccca 24564767  T
Q  658 tgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtc--nnnnnnncttaattcaaagtactaaactagtt 755  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||||  |||| | |||||||         ||| |||||||    |||| |||||    
T  24564768 tgattaccctatcattcaaacattaactatttgttaacctaccagattatatactcatcttaagtcttaaaaaaacttgattcaaaaacataaattagtt 24564867  T
Q  756 ttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatcatatttaagaagt 855  Q
    |||||||||||| || |||||||||||||||||| |||||||||| |||||||||| ||| |||||||||||| |||||||||||||||| ||||||| |    
T  24564868 ttcctcaattctcatttttcaacttcatcttttatttcgttcatcataaatctctcatca-aaatctcacatattaacaacaacatcata-ttaagaatt 24564965  T
Q  856 aaacaaccccatcatatattaagatactcaaaagtgcaaagattctccctatcacctcgaattctccaaaaacgcggtgtttgg 939  Q
    |||  ||||| ||||||||||||| || | |||||||||||||| | || || |||||||||||||||||||||||||||||||    
T  24564966 aaaagaccccgtcatatattaagagaccctaaagtgcaaagatttttcccattacctcgaattctccaaaaacgcggtgtttgg 24565049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 159 - 939
Target Start/End: Original strand, 24605310 - 24606084
Alignment:
Q  159 ttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtattttaatcataactaaacatctaaaaatgtaaatggagtccaacca 258  Q
    ||||| ||| |||||||| ||| |||||||||||||||||||  |||||  ||||||||||||||| ||||  ||||||||| |||||||||||||||||    
T  24605310 ttaaaaggttatgctgaattttcatggaaaacgcagcatgacttacatgtggtattttaatcataagtaaagttctaaaaatttaaatggagtccaacca 24605409  T
Q  259 gaaccaat-tgaaagttagaaaccatatatacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagct 357  Q
     ||  ||  |||||| ||  |||||||||||||||||   ||||| | | |||| ||||||||  ||| | ||||||||||||||||||||||||| |||    
T  24605410 aaaagaaactgaaagctaacaaccatatatacaacttcgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggct 24605509  T
Q  358 tagggaaaaagcacgaccttgttgatcctt-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggct 456  Q
     ||||||||||||| |||||| ||||||   |||| |||| ||| ||||||||||||||||||||  |||||||||||||||| ||||||| |||||| |    
T  24605510 -agggaaaaagcacaaccttgctgatcccagctgatccctgtgtagtattttgatcatatattgaattctagatgcttaaatcgagtcccttcaaaggtt 24605608  T
Q  457 agtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtga 556  Q
     |||||| |||||||||||| ||||||| ||| |||| ||||||||| ||| ||||||||||||| ||| ||||     | | ||| |||||||||||||    
T  24605609 ggtgaaa-ctaacatccatatctacaacttttgtgaatacacctaaatccatttcagaacttaaagttgccaaa-----acattaataaacgcacggtga 24605702  T
Q  557 cagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttcc 656  Q
    |||||||||||||||| | |||||||||  ||||||||||||||||| |||||||||||||||||| ||||||| ||| ||  ||||||| || | | ||    
T  24605703 cagcaaaatcgcagttcttctgcgatttaactttggggaaccctttttgactccgttttcgatcatatactctctaaaatcggccctaatcttta-tccc 24605801  T
Q  657 atgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtc--nnnnnnnctta-attc-aaagtactaaacta 752  Q
    ||||||||||||||||||||||||||| | || ||||||||||||||||||  |||| | |||||||         |||| |||| |||  | |||| ||    
T  24605802 atgattaccctatcattcaaacattaactatttgttaacctaccagattatatactcatcttaagtcttaaaaaaacttagattcaaaaacaataaatta 24605901  T
Q  753 gttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatcatatttaaga 852  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||| |||||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  24605902 gttttcctcaattctcatttttcaacttcatcttttatttcgttcatcataaatctctcatca-aaatctcacatattaacaacaacatcata-ttaaga 24605999  T
Q  853 agtaaacaaccccatcatatattaagatactcaaaagtgcaaagattctccctatcacctcgaattctccaaaaacgcggtgtttgg 939  Q
    | ||||  ||||| ||||||||||||| || | |||||||||||||| |||| || |||||||||||||| ||||||||||||||||    
T  24606000 attaaaagaccccgtcatatattaagagaccctaaagtgcaaagattttccc-attacctcgaattctcc-aaaacgcggtgtttgg 24606084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 281 - 916
Target Start/End: Original strand, 13938455 - 13939079
Alignment:
Q  281 catatatacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgtt 380  Q
    ||||| |||||||||  ||||||| |||||| ||||||||| ||| ||| ||||||||| |||||||||||||||||| |||||| ||||||||||||      
T  13938455 catatctacaactttcatgaagacgcccaaacctaattcggaacagaaagtggtagaaatgttgattttcctaagcttggggaaagagcacgaccttg-- 13938552  T
Q  381 gatccttctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataacta 480  Q
           |||| || | ||| ||||||||||||||| ||| | |||  ||||||||||| | ||||| |||| |||||||||| ||||||| |||| |||    
T  13938553 -------ctgacccatgtgtagtattttgatcatatcttgcgttctgaatgcttaaatccaatccctacaaatgctagtgaaatctaacattcatatcta 13938645  T
Q  481 caacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtgacagcaaaatcgcagttgtgctgcg 580  Q
    |||| || |||||||||| |||||||||| || |||||||||||| ||||  |||| |||||||||| ||| | |||| |||||||| |||| |||||||    
T  13938646 caactttcatgaagacacataaacccaat-cataacttaaacttgccaaatcgagacagtaagaaacacacagcgacaacaaaatcgtagttctgctgcg 13938744  T
Q  581 atttcgctttggggaacccttttcgactcc-gttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaaca 679  Q
    ||||||||||||||||||||||| ||||||  ||||  ||| | |||||| ||||||| ||| |||| |||||   ||||| ||| |||| |||||||||    
T  13938745 atttcgctttggggaacccttttagactccatttttttatcttttactctgcaaactcgaccataatcttcac-cgcatgactactctataattcaaaca 13938843  T
Q  680 ttaattcttcgttaacctaccagattatccactctttttaagtcnnnnnnncttaattcaaagtactaaactagttttcctcaattctgatatttcaact 779  Q
     |||||||| ||||||||||| ||||||||| ||||||||||         || ||||||||   ||||||||||||||||||||||| || ||||||||    
T  13938844 ctaattctttgttaacctaccggattatccattctttttaaggataaaaaactcaattcaaatacctaaactagttttcctcaattctcatctttcaact 13938943  T
Q  780 tcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatcatatttaagaagtaaacaac-cccatcatatattaag 878  Q
    | |||||| |||||||||||| |||||||||| ||| ||||||||||| |||||||||||| |||  ||||||| |||||| |  |||||||||||||||    
T  13938944 ttatctttcaattcgttcatcataaatctctcatca-aaatctcacatcataacaacaacaacat-cttaagaattaaacaccgtccatcatatattaag 13939041  T
Q  879 atactcaaaagtgcaaagattctccctatcacctcgaa 916  Q
    |||| | |||||||||||||||| ||| | ||||||||    
T  13939042 atacactaaagtgcaaagattcttcctcttacctcgaa 13939079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 403 - 841
Target Start/End: Complemental strand, 25581836 - 25581400
Alignment:
Q  403 tattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaa 502  Q
    |||||||||||||| | ||| |||||| ||||||||| ||||  ||||||||| |||||||  |||||||||||  |||||| || |||| ||||| |||    
T  25581836 tattttgatcatatctagagttctagacgcttaaatcgagtcaatccaaaggcgagtgaaagataacatccatatatacaactttcatgatgacacttaa 25581737  T
Q  503 acccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttt 602  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||| ||||||| |||| | || |||||||||||    
T  25581736 acccatttcggaacttaaacttgtcaaactgagacagtaagaaatgcacggtgatagcaaaatcacagttatgctgcgttttcac-ttcgggaacccttt 25581638  T
Q  603 tcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccag 702  Q
    ||||||||||||| |||| | |||||||||||||| |||||||| |||||  |||||||||| |||||| |  |||| |||||||| ||||||||||  |    
T  25581637 tcgactccgtttttgatcgtatactctccaaactcgaccctaatcttcac-cccatgattacactatcaattgaacactaattctttgttaacctactgg 25581539  T
Q  703 attatccactctttttaagtcnnnnnnncttaattcaaagtactaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgt 802  Q
    ||||||||||||||||| |         || ||||||||    ||||| |||||| ||||||||| || ||||||||||||||||||||||||||||| |    
T  25581538 attatccactctttttatggttaaaaaactcaattcaaaaagttaaacaagttttactcaattctcatctttcaacttcatcttttaattcgttcatcat 25581439  T
Q  803 aaatctctcctcacaaatctca-cataataacaacaacat 841  Q
    ||||||||| |||| | ||||| ||||| |||||||||||    
T  25581438 aaatctctcatcac-agtctcatcataacaacaacaacat 25581400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 402 - 716
Target Start/End: Original strand, 32948408 - 32948721
Alignment:
Q  402 gtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacaccta 501  Q
    ||||||||||||||| | ||| |||||| |||||||| ||||| ||||||||  ||||||||  |||||||||||  |||| | || ||||||||| |||    
T  32948408 gtattttgatcatatctagagttctagacgcttaaataaagtcactccaaagtatagtgaaagataacatccatatatacatctttcatgaagacatcta 32948507  T
Q  502 aacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaaccctt 601  Q
    ||| || ||| ||||||||||||||||||  |||| |||||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||||||||    
T  32948508 aactcagttcggaacttaaacttgtcaaatagagacagtaagaaacacacagtgacagcaaaatcgcagttctgctgcgatttcactttggggaaccctt 32948607  T
Q  602 ttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctacca 701  Q
    ||| |||  ||||| |||||| ||||||||||| || |||||||| |||||  |||||||||| |||||||||||||| |||||||| || ||||||       
T  32948608 ttctactttgtttttgatcatatactctccaaattcgaccctaatcttcac-cccatgattacactatcattcaaacactaattctttgtcaacctaatg 32948706  T
Q  702 gattatccactcttt 716  Q
    |||||||||||||||    
T  32948707 gattatccactcttt 32948721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 17459348 - 17459252
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatcta 104  Q
    |||||||||| |||||||||||||||||  ||||| |||||||||||||||||| ||||||||| | |||| ||||||||||| |||||| ||||||    
T  17459348 ttagactcgccatttccttaaggtaatcgtttctatttatgcctaaacacacttcctcatttaggtatataatttaaggactcttacttttaatcta 17459252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 388 - 510
Target Start/End: Complemental strand, 25582042 - 25581920
Alignment:
Q  388 ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtt 487  Q
    |||| |||| ||| ||||||| ||||||| ||||| ||||||| |||||||  |||||||||||||||||||||||  ||||||||||| ||||||| ||    
T  25582042 ctgacccctatgtagtattttcatcatatcttgagttctagatacttaaatagagtccctccaaaggctagtgaaatgtaacatccatatctacaacttt 25581943  T
Q  488 tatgaagacacctaaacccaatt 510  Q
     ||||||||| | ||||| ||||    
T  25581942 catgaagacatcaaaacctaatt 25581920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 25582315 - 25582260
Alignment:
Q  28 aggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagttta 83  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  25582315 aggtaatcacttctacttatgcctaaacacactttctcatttagatatatagttta 25582260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 23908067 - 23908122
Alignment:
Q  28 aggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagttta 83  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||    
T  23908067 aggtaatcacttctatttatgcgtaaacacactttctcatttagatatatagttta 23908122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 745 - 818
Target Start/End: Original strand, 32948760 - 32948833
Alignment:
Q  745 ctaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaa 818  Q
    |||||| |||||||||| ||||| || |||||||||||||||||||| |||||||| |||||||| | ||||||    
T  32948760 ctaaacaagttttcctcgattcttatctttcaacttcatcttttaatccgttcatcataaatctcacatcacaa 32948833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 24760370 - 24760429
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcat 67  Q
    |||||||| | |||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  24760370 ttagactcaccattttcttaaggtaatcacttctatttatgcctaaacacacttcctcat 24760429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 719
Target Start/End: Original strand, 14137809 - 14137873
Alignment:
Q  655 ccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactcttttta 719  Q
    ||||||||| | |||||| |||||| ||||||||| ||||||||||| |||||| ||||||||||    
T  14137809 ccatgattatcatatcatccaaacagtaattcttcattaacctaccaaattatctactcttttta 14137873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 654 - 717
Target Start/End: Original strand, 23909038 - 23909101
Alignment:
Q  654 tccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||  |||||||||| ||||    
T  23909038 tccatgattaccctatcatgcaaacacaaattctttgttaacctaccgaattatccactttttt 23909101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 800
Target Start/End: Original strand, 14137898 - 14137952
Alignment:
Q  745 ctaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatc 800  Q
    |||||||||||| |||||||||| || ||||||||| ||||||||||| |||||||    
T  14137898 ctaaactagttt-cctcaattctcatctttcaactttatcttttaatttgttcatc 14137952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 24144553 - 24144491
Alignment:
Q  141 agatattttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgaccca 203  Q
    |||| |||||||||||||||||| |||  || |||||||| ||| |||| |||||||||||||    
T  24144553 agatgttttagagtccacttaaagggttgtgatgaagtttcatgaaaaaagcagcatgaccca 24144491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 636 - 721
Target Start/End: Original strand, 25791666 - 25791750
Alignment:
Q  636 tcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    ||||||||||| |||||| |  |||||| ||||||||||||||| ||||  |  ||||||||||  |||||| |||||||||||||    
T  25791666 tcaaccctaatcttcact-ctgtgattaacctatcattcaaacactaatcataggttaacctactggattattcactctttttaag 25791750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 744 - 800
Target Start/End: Original strand, 25791773 - 25791830
Alignment:
Q  744 actaaactagttttcctcaattctgatatttcaacttcatctttt-aattcgttcatc 800  Q
    |||||||||||||| ||||||||| || |||||||||||  |||| ||||||||||||    
T  25791773 actaaactagtttttctcaattctcatctttcaacttcacattttcaattcgttcatc 25791830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 12426 - 11900
Alignment:
Q  18 tatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggct 117  Q
    |||| |||| ||||||||| || || |||| ||||||||||||| || |||||||| |||||||||||||  | |||||| | |||||| |||||  |||    
T  12426 tattaccttgaggtaatcaattatatttatccctaaacacacttccttatttagatatatagtttaaggaaccttacttttactctacatgctaagagct 12327  T
Q  118 tgcttaaactcactaatgcactca--gatattttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtattt 215  Q
    || |||||||||||||||  ||||  ||| |||||||||||| | ||| ||| |||||||| ||| ||||||| |||||||||||  ||||||  |||||    
T  12326 tgattaaactcactaatgttctcatagatgttttagagtccattgaaagggttatgctgaaatttcatggaaagcgcagcatgacgtacatgctttattt 12227  T
Q  216 taatcataactaaacatctaaaaatgtaaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagacacccaaatcta 315  Q
    ||||||||| | ||  ||||||||| ||||||||||||||||| ||  || | |||  |   ||  || | |||||||||  |||| || |||||| |||    
T  12226 taatcataagtcaagttctaaaaatttaaatggagtccaaccaaaataaaataaaaaatcacaattatgtctacaactttcatgaatactcccaaaccta 12127  T
Q  316 attcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatccttctgaaccctttgtggtattttgatcata 415  Q
    |||| | | | ||| ||||||||||||||||||||||||| || |||||||||||| |||||||||| |||         | ||| ||||||||||||||    
T  12126 attcagaaaagaaagtggtagaaaagttgattttcctaagtttggggaaaaagcacaaccttgttgaccct---------tgtgtagtattttgatcata 12036  T
Q  416 tattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaa 515  Q
    | ||||  |||||||  ||||||  ||||| || |||||||||||||| |||||||||||| ||||||  ||||| ||||||||||||||||||||| ||    
T  12035 tcttgatttctagatttttaaattgagtccatctaaaggctagtgaaaactaacatccatatctacaaattttataaagacacctaaacccaattcataa 11936  T
Q  516 cttaaacttgtcaaactgagagagtaagaaacgcac 551  Q
    |||||||||| ||||||||||  |||||||||||||    
T  11935 cttaaacttgccaaactgagacggtaagaaacgcac 11900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 553 - 904
Target Start/End: Complemental strand, 11858 - 11516
Alignment:
Q  553 gtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcac 652  Q
    |||||||||||||| ||||| | |  ||||||||| |||| |||||||||| ||| |||||||||||| | || |||||||||||  || |||| |||||    
T  11858 gtgacagcaaaatcacagttctaca-cgatttcgccttggagaaccctttttgacaccgttttcgatcctatattctccaaactcggccgtaatcttcac 11760  T
Q  653 ttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtc-nnnnnnncttaattcaaagtactaaact 751  Q
     | |||||||| | |||| || ||||| |||||||| |||||| |||| |||||||||||| ||||||| |        || ||||||||    ||||||    
T  11759 ct-catgattatcttatcgttgaaacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaact 11661  T
Q  752 agttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatcatatttaag 851  Q
    ||||||| |||||||| || ||||| || |||||||||||||||| ||| |||||||||| |||| |||||||||| |||||| ||||       |||||    
T  11660 agttttcttcaattctcatctttcatctgcatcttttaattcgtttatcataaatctctcatcac-aatctcacatcataacatcaac-------ttaag 11569  T
Q  852 aagtaaacaaccccatcatatattaagatactcaaaagtgcaaagattctccc 904  Q
    || |||||| |||| |||||||||||||||| | |||||||||||||||||||    
T  11568 aaataaacacccccgtcatatattaagataccctaaagtgcaaagattctccc 11516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 150; Significance: 9e-79; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 44 - 721
Target Start/End: Original strand, 12834 - 13519
Alignment:
Q  44 ttatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggcttgcttaaactcactaatgcactcaga 143  Q
    |||||||||||||||||| ||||| ||| | |||| ||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||   ||| |    
T  12834 ttatgcctaaacacacttcctcatctaggtatatattttaaggactcttacttttaatttacacgctaatggcttgcttaaactcactaatgatgtcata 12933  T
Q  144 ta-ttttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtattttaatcataactaaacatctaaaaatgt 242  Q
     | |||||||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||| ||| |||| |||||| ||||||||  | ||||||| |    
T  12934 gaattttagagtccactgagagggttatgctgaaatttcatggaaaacgcagcatgacccacgtgcggtatattaatcctaactaaagttataaaaatct 13033  T
Q  243 aaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagt 342  Q
    |||| | ||||||||| || ||| | |||| ||  |||||||| |||||||||  ||||||| |||||| ||||||| | ||| | |||   ||||||||    
T  13034 aaatagggtccaaccaaaagcaactcaaagctaacaaccatatctacaactttcatgaagactcccaaacctaattcagaacagacaattccagaaaagt 13133  T
Q  343 tgattttcctaagcttagggaaaaagcacgaccttgttgat-ccttctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaa 441  Q
    ||||||||||| |||  || ||| || |||||  || |||| ||| |||| |||| ||| ||| ||||||||||| ||| | ||||  |||||||||| |    
T  13134 tgattttcctatgctcgggaaaagaggacgactgtgctgatccctgctgacccctgtgtagtaatttgatcatatcttgtgttctatgtgcttaaatcga 13233  T
Q  442 gtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagta 541  Q
    || ||||||||  | ||||| |  ||||||||||| ||||||| ||  ||||   ||||||||||| |||  ||||||||||||||||||||||| | ||    
T  13234 gtgcctccaaacacgagtgacagataacatccatatctacaactttcgtgaaagaacctaaacccagttcgaaacttaaacttgtcaaactgagacaata 13333  T
Q  542 agaaac-------gcacggtgacagcaaaatcgcagttgtgctgcgatttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaa 633  Q
    | ||||       ||||  ||||| ||||||| |||||  |||||||||||| ||||||||||  |||||||||||| |||||||||   ||||||||||    
T  13334 a-aaacgtgttttgcacactgacaacaaaatcccagttcagctgcgatttcgcctttggggaaatcttttcgactcctttttcgatccaatactctccaa 13432  T
Q  634 actcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    ||   ||||||||  | ||  | ||||| |||||||||||  |||| ||||| ||| | |||||||   |||||||||||||||||||    
T  13433 acatgaccctaatcattac-cctatgatcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaag 13519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 144; Significance: 3e-75; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 18 - 721
Target Start/End: Original strand, 1109 - 1820
Alignment:
Q  18 tatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggct 117  Q
    |||| |||| || |||||||||||| |||||||||||||||||| ||||| ||| | |||| ||||||||||| |||||| ||| |||||||||| ||||    
T  1109 tattaccttgagctaatcacttctatttatgcctaaacacacttcctcatctaggtatatattttaaggactcttacttttaatttacacgctaatggct 1208  T
Q  118 tgcttaaactcactaatgcactcagata-ttttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtatttt 216  Q
    ||||||||||||||||||   ||| | | |||||||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||| ||| |||| ||    
T  1209 tgcttaaactcactaatgatgtcatagaattttagagtccactgagagggttatgctgaaatttcatggaaaacgcagcatgacccacgtgcggtatatt 1308  T
Q  217 aatcataactaaacatctaaaaatgtaaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagacacccaaatctaa 316  Q
    |||| ||||||||  | ||||||| ||||| | ||||||||| || ||| | |||| ||  |||||||| |||||||||  ||||||| |||||| ||||    
T  1309 aatcctaactaaagttataaaaatctaaatagggtccaaccaaaagcaactcaaagctaacaaccatatctacaactttcatgaagactcccaaacctaa 1408  T
Q  317 ttcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgat-ccttctgaaccctttgtggtattttgatcata 415  Q
    ||| | ||| |||||   ||||||||||||||||||| |||   | ||| || |||||  || |||| ||| ||||  ||| ||| ||| ||||||||||    
T  1409 ttcagaacagaaaattccagaaaagttgattttcctatgctcgcgaaaagaggacgactgtgctgatccctgctgactcctgtgtagtaatttgatcata 1508  T
Q  416 tattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaa 515  Q
    | ||||| ||||  |||||||||  ||| |||| |||| | ||||| |  ||||||| ||| ||||||| ||  |||||  ||||||| ||| |||  ||    
T  1509 tcttgagttctatgtgcttaaattgagtgcctctaaagccgagtgacagataacatctatatctacaactttcgtgaaggtacctaaatccagttcgaaa 1608  T
Q  516 cttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctgcgatttcg-ctttggggaacccttttcgac 607  Q
    ||||||||||||||||||||| | ||| | ||       ||||  |||||||||||||||||||  ||||||||| || |||| |||||  |||||||||    
T  1609 cttaaacttgtcaaactgagacaataa-acacgccttttgcacactgacagcaaaatcgcagttcagctgcgattccgcctttagggaaatcttttcgac 1707  T
Q  608 tccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattat 707  Q
    | |||||||||||   ||||||||||||   ||||||||  | ||  | ||||| | |||||||||  |||| ||||| ||| | |||||||   |||||    
T  1708 tacgttttcgatccaatactctccaaacatgaccctaatcattac-cctatgatcaacctatcattataacactaattattcatcaacctactgtattat 1806  T
Q  708 ccactctttttaag 721  Q
    ||||||||||||||    
T  1807 ccactctttttaag 1820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 445 - 921
Target Start/End: Complemental strand, 22497655 - 22497189
Alignment:
Q  445 cctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtc-aaactgagagagtaag 543  Q
    ||||||||||||||||||| |||||| ||||| ||||||| || |||||||||| ||| ||||||| |||||||||||| ||| |||| |||| | |||     
T  22497655 cctccaaaggctagtgaaagctaacaaccatatctacaactttcatgaagacacgtaa-cccaatttagaacttaaact-gtcgaaaccgagacaataaa 22497558  T
Q  544 aaacgcacggtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccct 643  Q
    |||||||||||||||||||||| | ||||  |||||||||| || ||| ||||||||||| ||||| ||||| |||| | ||||||||||| || |||||    
T  22497557 aaacgcacggtgacagcaaaattgtagttcagctgcgattttgccttgaggaaccctttttgactctgtttttgatcctatactctccaaaatcgaccct 22497458  T
Q  644 aatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtc-nnnnnnncttaattcaaag 742  Q
    ||| |||||  || |||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| ||||||| |        || ||||||||     
T  22497457 aatcttcac-cccgtgattaccctattattcaaacactaattcttcgtcaacctaccatattatccactccttttaaggctaaaaaaactcaattcaaaa 22497359  T
Q  743 tactaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatc 842  Q
      ||||| || |||||||||||||   | ||||||||||||||||||||||||||||| ||||||| || |||| |||||||||| ||||||||| ||||    
T  22497358 acctaaattaattttcctcaattc---tctttcaacttcatcttttaattcgttcatcataaatctttcatcac-aatctcacattataacaacatcatc 22497263  T
Q  843 atatttaagaagtaaacaaccccatcatatattaagatactcaaaagtgcaaagattctccctatcacctcgaattctc 921  Q
        ||||||| ||||||  ||| ||||||| |||||||| |  ||||||||||||||||||  | | |||||||||||    
T  22497262 ----ttaagaaataaacacacccgtcatataataagatac-cctaagtgcaaagattctcccccttagctcgaattctc 22497189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 12 - 523
Target Start/End: Complemental strand, 22498166 - 22497663
Alignment:
Q  12 actcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgcta 111  Q
    ||||| |||| |||| ||||||||||||||  |||| ||||||   |||| ||  |||| || |||||||||||||| | || ||| | |||||||||||    
T  22498166 actcgttattaccttgaggtaatcacttctgtttattcctaaaggaacttccttgtttatatatatagtttaaggacccttaattttactctacacgcta 22498067  T
Q  112 acggcttgcttaaactcactaatgcactca--gatattttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgca 209  Q
    ||||||||||||||||||||||| | ||||  ||| || || |||||||| ||| |||  ||||||| ||| |||||||||||||||||||||   | |     
T  22498066 acggcttgcttaaactcactaattctctcatagatgttataaagtccactcaaagggtt-tgctgaaatttaatggaaaacgcagcatgacccttgtacg 22497968  T
Q  210 gtattttaatcataactaaacatctaaaaatgtaaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagacaccca 309  Q
    ||||||||||||||| | ||  ||||||||| ||||||||||||||||| ||  || |||||  ||  | |||||| |||||||||  ||||||| ||||    
T  22497967 gtattttaatcataaatcaagttctaaaaatctaaatggagtccaaccaaaataaaatgaaatctaacatccatatttacaactttcatgaagactccca 22497868  T
Q  310 aatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatccttctgaaccctttgtggtattttg 409  Q
     | ||||||||| ||||||| ||||||||||||||  |||||||||||| |||||| | || || | |||||| || | || |         ||||||||    
T  22497867 gacctaattcggaacaaaaagtggtagaaaagttgggtttcctaagcttggggaaagaccaagatcctgttgacccctgtgta--------agtattttg 22497776  T
Q  410 atcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaat 509  Q
    | ||||| ||||| |||||||||||||||  |||||||||||||| |||||||| ||||||| |||| ||||||| || ||||||| |||| ||||||||    
T  22497775 accatatcttgagttctagatgcttaaatggagtccctccaaaggatagtgaaagctaacattcatatctacaactttcatgaagatacct-aacccaat 22497677  T
Q  510 tcagaacttaaact 523  Q
    | |||| |||||||    
T  22497676 ttagaaattaaact 22497663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 298 - 635
Target Start/End: Original strand, 20915760 - 20916105
Alignment:
Q  298 tgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcctt-ctgaaccct 396  Q
    ||||||| |||||| ||||||| | ||| |||||   | ||||||||||||||||| |||  || ||| || |||||  || |||||| | |||| ||||    
T  20915760 tgaagactcccaaacctaattcagaacataaaattccaaaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccctgctgacccct 20915859  T
Q  397 ttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagac 496  Q
     ||| ||| ||||||||||| ||||| ||||  |||||||||| ||| ||| ||||| | ||||| || ||||||||||| ||||||| ||| ||||| |    
T  20915860 atgtagtaatttgatcatatcttgagttctatgtgcttaaatcgagtgcctgcaaagccgagtgacacataacatccatatctacaacttttgtgaaggc 20915959  T
Q  497 acctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaa------acgcacggtgacagcaaaatcgcagttgtgctgcgatttcg-ctt 589  Q
    ||||||||||| |||  ||||||||||||||||||||||| | ||| ||        ||||  |||||||||||||||||||  |||||||||||| |||    
T  20915960 acctaaacccagttcgaaacttaaacttgtcaaactgagacaataaaaatgcgttttgcacactgacagcaaaatcgcagttcagctgcgatttcgcctt 20916059  T
Q  590 tggggaacccttttcgactccgttttcgatcatgtactctccaaac 635  Q
    |||||||  |||||||| |||||||||||||   ||||||||||||    
T  20916060 tggggaaatcttttcgaatccgttttcgatccaatactctccaaac 20916105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 287 - 721
Target Start/End: Original strand, 27472897 - 27473338
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||| ||||||| | ||| |||||   ||||||||||||||||||| |||  || ||| || |||||  || ||| ||     
T  27472897 tacaactttaatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgacccc 27472996  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| |||| ||| ||| ||||||||||| | ||| ||||  |||||||||||||| ||||||||| | ||||| |  ||||||||||| ||||||      
T  27472997 tgctgacccctgtgtagtaatttgatcatatctagagttctatgtgcttaaatcaagtgcctccaaagccgagtgacagataacatccatatctacaaat 27473096  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgc-------acggtgacagcaaaatcgcagttgtgctg 578  Q
    ||  ||||| |||||||||| | ||   ||||||||||||||||||||||| | ||| ||||||       ||  |||||||||||||||||||  ||||    
T  27473097 ttcgtgaaggcacctaaacctagtttgaaacttaaacttgtcaaactgagacaataa-aaacgcgttttgcacactgacagcaaaatcgcagttcagctg 27473195  T
Q  579 cgatttcgc-tttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaa 677  Q
    ||||||||| |||||||||  ||||||||||||||||||||||   ||||||||||||   ||||||||  | ||  | ||||  |||||||||||  ||    
T  27473196 cgatttcgcttttggggaaatcttttcgactccgttttcgatccaatactctccaaacatgaccctaatcattac-cctatgaccaccctatcattataa 27473294  T
Q  678 cattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    || ||||| ||| | |||||||   |||||||||||||||||||    
T  27473295 cactaattattcatcaacctactgtattatccactctttttaag 27473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 388 - 721
Target Start/End: Complemental strand, 34858701 - 34858362
Alignment:
Q  388 ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtt 487  Q
    |||| |||| ||| ||| ||||||||||| ||||| ||||  |||||||||| ||| |||| |||| | ||||| |  |||||||||||  |||||| ||    
T  34858701 ctgacccctgtgtagtaatttgatcatatcttgagttctatgtgcttaaatcgagtgcctcaaaagccgagtgacagataacatccatatgtacaacttt 34858602  T
Q  488 tatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctgcg 580  Q
    ||||||| |||||||||||| |||  ||||||||||||||||||||||| | ||| ||||       ||||   || |||||||||||||||  ||||||    
T  34858601 tatgaaggcacctaaacccagttcgaaacttaaacttgtcaaactgagacaataa-aaacgtgttttgcacaccgaaagcaaaatcgcagttcagctgcg 34858503  T
Q  581 atttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaaca 679  Q
    |||||| ||||||||||  |||||||||||||||||||||    ||||||||||||   ||||||||  | ||  | ||||| |||||||||||  ||||    
T  34858502 atttcgcctttggggaaatcttttcgactccgttttcgatacaatactctccaaacatgaccctaatcattac-cctatgatcaccctatcattataaca 34858404  T
Q  680 ttaattcttcgttaacctaccagattatccactctttttaag 721  Q
     ||||| ||| | |||||||   |||||||||||||||||||    
T  34858403 ctaattattcatcaacctactgtattatccactctttttaag 34858362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 388 - 721
Target Start/End: Complemental strand, 34873763 - 34873424
Alignment:
Q  388 ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtt 487  Q
    |||| |||| ||| ||| ||||||||||| ||||| ||||  |||||||||| ||| |||| |||| | ||||| |  |||||||||||  |||||| ||    
T  34873763 ctgacccctgtgtagtaatttgatcatatcttgagttctatgtgcttaaatcgagtgcctcaaaagccgagtgacagataacatccatatgtacaacttt 34873664  T
Q  488 tatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctgcg 580  Q
    ||||||| |||||||||||| |||  ||||||||||||||||||||||| | ||| ||||       ||||   || |||||||||||||||  ||||||    
T  34873663 tatgaaggcacctaaacccagttcgaaacttaaacttgtcaaactgagacaataa-aaacgtgttttgcacaccgaaagcaaaatcgcagttcagctgcg 34873565  T
Q  581 atttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaaca 679  Q
    |||||| ||||||||||  |||||||||||||||||||||    ||||||||||||   ||||||||  | ||  | ||||| |||||||||||  ||||    
T  34873564 atttcgcctttggggaaatcttttcgactccgttttcgatacaatactctccaaacatgaccctaatcattac-cctatgatcaccctatcattataaca 34873466  T
Q  680 ttaattcttcgttaacctaccagattatccactctttttaag 721  Q
     ||||| ||| | |||||||   |||||||||||||||||||    
T  34873465 ctaattattcatcaacctactgtattatccactctttttaag 34873424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 745 - 932
Target Start/End: Complemental strand, 29718262 - 29718075
Alignment:
Q  745 ctaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatcat 844  Q
    |||||||||||| ||| |||||| || |||||||||||||||||||||| |||||| | | |||||| ||| |||| |||||| |||||||||||| |||    
T  29718262 ctaaactagttt-ccttaattctcatctttcaacttcatcttttaattcattcatcatcattctctcatca-aaat-tcacatcataacaacaacaacat 29718166  T
Q  845 atttaagaagtaa-acaacc---ccatcatatattaagatactcaaaagtgcaaagattctccctatcacctcgaattctccaaaaacgcgg 932  Q
    | |||| |  ||| ||||||   |||||||| |||||||||||| |||||||||| ||||||||  | |||||||||| ||| |||||||||    
T  29718165 a-ttaaaatttaagacaacccttccatcatagattaagatactctaaagtgcaaatattctcccccttacctcgaattatccgaaaacgcgg 29718075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 606 - 720
Target Start/End: Complemental strand, 18985517 - 18985404
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| ||||| || |||||||| | |||| |||| || | ||||||||||||||| |||||||||||||||||||||||||    
T  18985517 actccgttttcgaccctaaactcgccaaattcgaccctaatctgcact-ccatcatcaacctatcattcaaacactaattcttcgttaacctaccagatt 18985419  T
Q  706 atccactctttttaa 720  Q
     ||||||||||||||    
T  18985418 gtccactctttttaa 18985404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 660 - 721
Target Start/End: Complemental strand, 26861449 - 26861388
Alignment:
Q  660 attaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    ||||||||||| ||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  26861449 attaccctatcgttagaacattaattcttcattaacctaccagattatccactctttttaag 26861388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 762 - 842
Target Start/End: Original strand, 24788461 - 24788540
Alignment:
Q  762 aattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatc 842  Q
    |||||| |||||||||||||||||||||||| | ||||| | |||||||  |||| |||||||||| ||||||||||||||    
T  24788461 aattctcatatttcaacttcatcttttaattagctcatcatcaatctctgatcac-aatctcacatcataacaacaacatc 24788540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 717
Target Start/End: Original strand, 13361844 - 13361904
Alignment:
Q  657 atgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    ||||||||||||||||   |||| ||||||| | |||||||||||||||||||||||||||    
T  13361844 atgattaccctatcatcgtaacactaattctccattaacctaccagattatccactctttt 13361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 141; Significance: 2e-73; HSPs: 2)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 407 - 811
Target Start/End: Complemental strand, 1241 - 838
Alignment:
Q  407 ttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaaccc 506  Q
    |||||||||||| ||  |||||| ||||||||| |||| ||||||||||||||||||  || |||||||| || |||| || |||||||||| |||||||    
T  1241 ttgatcatatatagatttctagacgcttaaatcgagtcactccaaaggctagtgaaagataccatccatatctgcaactttcatgaagacacttaaaccc 1142  T
Q  507 aattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcga 606  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |||| | || ||||||||||    
T  1141 agttcagaacttaaacttgtcaaactgagacagtaagaaacgcacggtgacagcaaaatcacagttctgctgcgatttcacttt-gtgagcccttttcga 1043  T
Q  607 ctccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatta 706  Q
    |||| ||||  ||| | |||||||||||| | |||||||| ||||| | ||||||||| |||||| | ||||| ||| |||| |||||||||   |||||    
T  1042 ctccattttttatcgtatactctccaaacacgaccctaatcttcacct-catgattacactatcaataaaacactaactctttgttaacctattggatta 944  T
Q  707 tccact-ctttttaagtcnnnnnnncttaattcaaagtactaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaa 805  Q
     ||||| ||||| |||         || ||||||||   | |||  |||||||||||||||| || |||||||||| ||||| |||||||||||| ||||    
T  943 cccactccttttaaagctaaagaaactcaattcaaaaaccaaaataagttttcctcaattctcatctttcaacttcgtctttgaattcgttcatcataaa 844  T
Q  806 tctctc 811  Q
    ||||||    
T  843 tctctc 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 403 - 510
Target Start/End: Complemental strand, 1436 - 1329
Alignment:
Q  403 tattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaa 502  Q
    |||||| ||||||||||||| ||||||| |||||||  |||||||| |||||||| |||||  ||||||||||| ||||||| || ||||||||| | ||    
T  1436 tattttcatcatatattgagttctagatacttaaatagagtccctctaaaggctactgaaatttaacatccatatctacaactttcatgaagacatcaaa 1337  T
Q  503 acccaatt 510  Q
    ||| ||||    
T  1336 acctaatt 1329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 2e-73; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 18 - 721
Target Start/End: Original strand, 11090827 - 11091529
Alignment:
Q  18 tatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggct 117  Q
    |||| |||| || |||||||||||| |||||||||||||||||| ||||  ||| |||||| |||||||| || |||||| ||| ||||| |||| ||||    
T  11090827 tattaccttgagctaatcacttctatttatgcctaaacacacttcctcacctaggtgtatattttaaggattcttacttttaatttacacactaatggct 11090926  T
Q  118 tgcttaaactcactaatgcactcagata--ttttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtattt 215  Q
    ||||||| ||||||||||   ||| | |  |||||||||||||| | | ||| || ||||| ||| | || |||||||||||||||||||||  ||||||    
T  11090927 tgcttaacctcactaatgatgtcatagaagttttagagtccactgagagggttatactgaaatttcaagggaaacgcagcatgacccacatgtggtattt 11091026  T
Q  216 taatcataactaaacatctaaaaatgtaaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagacacccaaatcta 315  Q
    ||||| ||||||||  ||||||||| ||||||| ||||||||| || ||| | |||| ||  |||||||| |||||||||  ||||||| ||||||  ||    
T  11091027 taatcctaactaaagttctaaaaatataaatggggtccaaccaaaagcaactcaaagctaacaaccatatctacaactttcatgaagactcccaaactta 11091126  T
Q  316 attcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatccttctgaaccctttgtggtattttgatcata 415  Q
    |||| | ||| |||||   ||||||||||||||||||| |||  || ||| ||||||||  ||         |||| |||| ||| ||| |||||| |||    
T  11091127 attcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaagagcacgactgtg---------ctgacccctgtgtagtaatttgattata 11091217  T
Q  416 tattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaa 515  Q
    | ||||| | ||  |||||||||| ||| ||||||||| | ||||| |  ||||||||||| ||||||| |||| ||||| ||||||||||| |||  ||    
T  11091218 tcttgagttatatgtgcttaaatcgagtgcctccaaagccgagtgacaaataacatccatatctacaacttttacgaagaaacctaaacccatttcgaaa 11091317  T
Q  516 cttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctgcgatttcg-ctttggggaacccttttcgac 607  Q
    ||||||||||||||||||||| | ||| ||||       ||||  |||||||||||||| ||||  |||||||||||| ||||| ||||  |||||| ||    
T  11091318 cttaaacttgtcaaactgagacaataa-aaacgcattttgcacactgacagcaaaatcgtagttcagctgcgatttcgcctttgaggaaatcttttcaac 11091416  T
Q  608 tccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattat 707  Q
    ||| |||||||||   ||||||||||||   ||||||||  | ||  | |||||||||||||||||  |||| ||||| ||| | ||||||    |||||    
T  11091417 tccattttcgatccaatactctccaaacatgaccctaatcattac-cctatgattaccctatcattataacactaattattcatcaacctaatgtattat 11091515  T
Q  708 ccactctttttaag 721  Q
    ||||||||||||||    
T  11091516 ccactctttttaag 11091529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 406 - 635
Target Start/End: Complemental strand, 46580212 - 46579976
Alignment:
Q  406 tttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacc 505  Q
    ||||||||||| ||||| ||||  |||||||||| ||| ||||||||  | ||||| |  ||||||||||| ||||||| ||| ||||| ||||||||||    
T  46580212 tttgatcatatcttgagttctatgtgcttaaatcgagtgcctccaaatccgagtgacatataacatccatatctacaacttttgtgaaggcacctaaacc 46580113  T
Q  506 caattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctgcgatttcg-ctttggggaac 597  Q
    || |||| || |||||||||||||||||||| | ||| ||||       ||||  |||||||||||||||||||  |||||||||||| ||||||| ||     
T  46580112 cagttcaaaagttaaacttgtcaaactgagacaataa-aaacgcgttttgcacactgacagcaaaatcgcagttcagctgcgatttcgcctttgggtaaa 46580014  T
Q  598 ccttttcgactccgttttcgatcatgtactctccaaac 635  Q
     ||||||||||||||||||||||   ||||||||||||    
T  46580013 tcttttcgactccgttttcgatccaatactctccaaac 46579976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 606 - 721
Target Start/End: Complemental strand, 11800265 - 11800151
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  11800265 actccgttttcgaccctaaactcgccaaactcaaccctaatcttcact-ccatgattaccctatcattgaaacactaattcttctttaacctaccagatt 11800167  T
Q  706 atccactctttttaag 721  Q
    ||||| ||||||||||    
T  11800166 atccattctttttaag 11800151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 283 - 536
Target Start/End: Original strand, 48812478 - 48812732
Alignment:
Q  283 tatatacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttga 382  Q
    |||||||||||||  |||||||  ||||| ||||||||| ||| |||||   ||||||||||||||||||| |||  || ||| || |||||  || |||    
T  48812478 tatatacaactttcatgaagacttccaaacctaattcggaacagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctga 48812577  T
Q  383 tccttctgaaccctt-tgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactac 481  Q
    ||| | |  |||||| ||| ||| ||||||||||| ||||| ||||  |||| || |  ||| ||||||||| | ||||| |  ||||||||||| ||||    
T  48812578 tccctgttgacccttgtgtagtaatttgatcatatcttgagttctatgtgctaaactggagtgcctccaaagccgagtgacagataacatccatatctac 48812677  T
Q  482 aacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgaga 536  Q
    ||| ||| ||||| |||||||||||| |||  ||||||||||||||||| |||||    
T  48812678 aacttttgtgaaggcacctaaacccagttcgaaacttaaacttgtcaaattgaga 48812732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 335 - 502
Target Start/End: Original strand, 11310001 - 11310169
Alignment:
Q  335 agaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatc-cttctgaaccctttgtggtattttgatcatatattgagatctagatgct 433  Q
    |||||||||||||||||||||||  |||||| ||||||||| |||||||| ||  ||| | || ||| ||||||||||||||| ||||| ||||  | ||    
T  11310001 agaaaagttgattttcctaagctcggggaaagagcacgaccgtgttgatctctattgacctctctgtagtattttgatcatatcttgagttctatgtact 11310100  T
Q  434 taaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaa 502  Q
    |||||| ||| |||| |||||||||||| |  ||||||| ||| ||||||| ||| |||| ||||||||    
T  11310101 taaatcgagtgcctctaaaggctagtgacagataacatctatacctacaacttttgtgaaaacacctaa 11310169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 9694014 - 9693959
Alignment:
Q  28 aggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagttta 83  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  9694014 aggtaatcacttctatttatgcctaaacacactttctcatttagatatatagttta 9693959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 654 - 717
Target Start/End: Complemental strand, 9693231 - 9693168
Alignment:
Q  654 tccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    |||||||||||||||||||||||| |  |||| ||| |||||||||||||||||||||||||||    
T  9693231 tccatgattaccctatcattcaaataccaattattcattaacctaccagattatccactctttt 9693168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 11801222 - 11801147
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagttta 83  Q
    ||||||||||  || |||| ||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||||    
T  11801222 ttagactcgcctttaccttgaggtaatcacttctatttatgcctaaacacacttcctcgtttagatatatagttta 11801147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 476
Target Start/End: Complemental strand, 16379806 - 16379627
Alignment:
Q  298 tgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatccttc-tgaaccct 396  Q
    ||||||| ||||||||||||||   ||| ||| ||| |||||| || ||||||||| | || |||||| || |||||| || ||| || |  ||| ||||    
T  16379806 tgaagactcccaaatctaattcaaaacataaagtggcagaaaaattcattttcctatgtttggggaaagaggacgaccctgctgacccctgatgacccct 16379707  T
Q  397 ttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccata 476  Q
     ||| ||||||| ||||||||||||| ||||||| |||| ||  |||||||||| |||| | ||||| ||||||||||||    
T  16379706 gtgtagtattttcatcatatattgagttctagatacttacatagagtccctccagaggccaatgaaagctaacatccata 16379627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 12346931 - 12346842
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatacttt 97  Q
    |||||||||| ||| |||| ||||||||| ||||| ||||||||||| |||||| || |||||||| |||||||||| ||| | ||||||    
T  12346931 ttagactcgccattaccttgaggtaatcatttctatttatgcctaaagacacttccttatttagatatatagtttaaagacccttacttt 12346842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 744 - 800
Target Start/End: Complemental strand, 16068226 - 16068169
Alignment:
Q  744 actaaactagttttcctcaattctgatatttcaacttcatctttt-aattcgttcatc 800  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||    
T  16068226 actaaactagttttcctcaattctcatctttcaacttcatcttttcaatttgttcatc 16068169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 863 - 903
Target Start/End: Complemental strand, 9693036 - 9692996
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctcc 903  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  9693036 cccatcatagattaagatactctaaagtgcaaagattctcc 9692996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 755 - 842
Target Start/End: Original strand, 23089191 - 23089277
Alignment:
Q  755 tttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatc 842  Q
    ||||||||||||| || |||||||||| | ||||||||||||| ||   |||||||  |||| ||||||| || ||||||||||||||    
T  23089191 tttcctcaattctcatctttcaacttcgtattttaattcgttcgtcagcaatctctaatcac-aatctcatatcataacaacaacatc 23089277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 138; Significance: 1e-71; HSPs: 4)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 393 - 698
Target Start/End: Original strand, 14168 - 14472
Alignment:
Q  393 ccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatga 492  Q
    |||| ||| ||||||||||||||| | ||| | |||| ||||||||| |||| ||||||||| ||||||||  |||||||||||  |||||| || |       
T  14168 ccctgtgtagtattttgatcatatctagagttatagacgcttaaatcgagtcactccaaaggttagtgaaagataacatccatatatacaactttcacac 14267  T
Q  493 agacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggtgacagcaaaatcgcagttgtgctgcgatttcgctttgg 592  Q
    ||||| ||||||||| ||  |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||      
T  14268 agacaactaaacccagtttggaacttaaacttgcaaaactgagacagtaagaaacgcacggtgacagcaaaatcgcagttctgctgcgatttcactttaa 14367  T
Q  593 ggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgtt 692  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||||||| || |||||  |||||||||| |||||||||||||| |||||||| ||     
T  14368 ggaacccttttcgacttcgtttttgatcatatactctccaaactcaacccttatcttcac-cccatgattacactatcattcaaacactaattctttgta 14466  T
Q  693 aaccta 698  Q
    ||||||    
T  14467 aaccta 14472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 287 - 495
Target Start/End: Original strand, 13880 - 14079
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  |||||||  ||||| ||||||||| ||| ||| ||| |||||| |||||||||||| | || || ||| || |||||| || |||||      
T  13880 tacaactttcatgaagacttccaaacctaattcggaacataaagtggcagaaaaattgattttcctatgtttgggaaaagaggacgaccctgctgatc-- 13977  T
Q  387 tctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgt 486  Q
    ||||       ||| ||||||| ||||||| ||||| | ||||| | |||||  |||| |||||||||||||||||| |||  ||||||| ||||||| |    
T  13978 tctg-------tgtagtattttcatcatatcttgagttatagatacctaaatagagtctctccaaaggctagtgaaatctagaatccatatctacaactt 14070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 746 - 811
Target Start/End: Original strand, 14523 - 14588
Alignment:
Q  746 taaactagtttt-cctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctc 811  Q
    ||||| |||||| |||| ||||| || ||||||||||||||||||||| ||||||| ||||||||||    
T  14523 taaacaagtttttcctctattctcatctttcaacttcatcttttaatt-gttcatcataaatctctc 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 904
Target Start/End: Original strand, 14629 - 14670
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctccc 904  Q
    ||||||||| |||||||||| | |||||||||||||||||||    
T  14629 cccatcatagattaagataccctaaagtgcaaagattctccc 14670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 98; Significance: 9e-48; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 287 - 721
Target Start/End: Original strand, 11761 - 12202
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||| ||||||| | ||| |||||   ||||||||||||||||||| |||   | ||| || |||||  |||||||||     
T  11761 tacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgtgaaaagaggacgactgtgttgatccc 11860  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| |||| ||| ||| ||||||||||| ||||| ||||  |||||||||| ||| ||||||||| | ||||| |  ||||||||||| |||||||     
T  11861 tgctgacccctgtgtagtaatttgatcatattttgagttctatgtgcttaaatcgagtgcctccaaagccgagtgacagataacatccatatctacaact 11960  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctg 578  Q
    ||  ||||| |||||||||||| |||  ||||||||||||||||||||||| | ||| ||||       ||||  |||||||||||||||||||  ||||    
T  11961 ttcgtgaaggcacctaaacccagttcgaaacttaaacttgtcaaactgagacaataa-aaacgtgttttgcacactgacagcaaaatcgcagttcagctg 12059  T
Q  579 cgatttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaa 677  Q
    |||||||| ||||||||||  ||||||||||||||||||||||   ||||||||||||   ||||||||  | ||  | ||||| |||||||||||  ||    
T  12060 cgatttcgcctttggggaaatcttttcgactccgttttcgatccaatactctccaaacatgaccctaatcattac-cctatgatcaccctatcattataa 12158  T
Q  678 cattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    || ||||| ||| | |||||||   |||||||||||||||||||    
T  12159 cactaattattcatcaacctactgtattatccactctttttaag 12202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 287 - 721
Target Start/End: Original strand, 4741 - 5182
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||| ||||||| | ||| |||||   ||||||||||||||||||| |||   | ||| || |||||  |||||||||     
T  4741 tacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgtgaaaagaggacgactgtgttgatccc 4840  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| |||| ||| ||| ||||||||||| ||||| ||||  |||||||||| ||| ||||||||  | ||||| |  ||||||||||| |||||||     
T  4841 tgctgacccctgtgtagtaatttgatcatattttgagttctatgtgcttaaatcgagtgcctccaaacacgagtgacagataacatccatatctacaact 4940  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctg 578  Q
    ||  ||||   ||||||||||| |||  ||||||||||||||||||||||| | ||| ||||       ||||  |||||||||||||||||||  ||||    
T  4941 ttcgtgaaagaacctaaacccagttcgaaacttaaacttgtcaaactgagacaataa-aaacgtgttttgcacactgacagcaaaatcgcagttcagctg 5039  T
Q  579 cgatttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaa 677  Q
    |||||||| ||||||||||  |||||||||||| |||||||||   ||||||||||||   ||||||||  | ||  | ||||| |||||||||||  ||    
T  5040 cgatttcgcctttggggaaatcttttcgactccattttcgatccaatactctccaaacatgaccctaatcattac-cctatgatcaccctatcattataa 5138  T
Q  678 cattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    || ||||| ||| | |||||||   |||||||||||||||||||    
T  5139 cactaattattcatcaacctactgtattatccactctttttaag 5182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 17450882 - 17451114
Alignment:
Q  28 aggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggcttgcttaaact 127  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||| | |||||| | | |||| ||||||||||||||||||||    
T  17450882 aggtaatcacttctatttatgcctaaacacactttctaatttagatatatagattaaggacccttacttttactatacaagctaacggcttgcttaaact 17450981  T
Q  128 cactaatgcactc--agatattttagagtccacttaaatggtgatgctgaagttttatggaaaacgcagcatgacccacatgcagtattttaatcataac 225  Q
    ||||||||| |||  |||  |||||||| ||||| ||| | | || |  || ||| ||| ||||| ||||||||||||  ||| |||||||||| |||||    
T  17450982 cactaatgctctcatagaggttttagagaccactgaaaagattatccaaaaatttcatgaaaaacacagcatgacccatgtgcggtattttaataataac 17451081  T
Q  226 taaacatctaaaaatgtaaatggagtccaacca 258  Q
    | ||  |||||||||||||||||||||||||||    
T  17451082 tcaagttctaaaaatgtaaatggagtccaacca 17451114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 657 - 901
Target Start/End: Original strand, 17451265 - 17451509
Alignment:
Q  657 atgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtcnnnnnnn-cttaattcaaagtactaaactagtt 755  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||| |        || || | |||   ||||||||| |    
T  17451265 atgattaccctatcattcaaacactaactcttagttaacctaccagattatccactatttttaaggctaaaaaaactcaacttaaaaacctaaactagct 17451364  T
Q  756 ttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctcctcacaaatctcacataataacaacaacatcatatttaagaagt 855  Q
    |||||||||||| || |||||||||||||||||||||| |||||| |||||||||| |||| |||||||||| |||| | |||||||||  ||||||| |    
T  17451365 ttcctcaattctcatctttcaacttcatcttttaattctttcatcataaatctctcatcac-aatctcacatcataagagcaacatcat-cttaagaatt 17451462  T
Q  856 aaacaacc-ccatcatatattaagatactcaaaagtgcaaagattct 901  Q
    ||  | || ||||||||||||||||||| | ||||||||||||||||    
T  17451463 aattaccctccatcatatattaagataccctaaagtgcaaagattct 17451509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 590 - 721
Target Start/End: Original strand, 15544090 - 15544220
Alignment:
Q  590 tggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttc 689  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||  || |||| |||||  ||||||||||||||||| ||||||| ||||||||     
T  15544090 tggggaacccttttcgactccgttttagatcatatactctccaaactcggccataatcttcacc-ccatgattaccctatcaatcaaacactaattcttt 15544188  T
Q  690 gttaacctaccagattatccactctttttaag 721  Q
    ||||||||||||||||||||||||||||||||    
T  15544189 gttaacctaccagattatccactctttttaag 15544220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 31343289 - 31343413
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacac 107  Q
    |||||||||| ||| |||| ||||||||||||||| ||||||||||||  |||| ||||||||||| |||| |||| |||  | |||||| ||| |||||    
T  31343289 ttagactcgccattaccttgaggtaatcacttctatttatgcctaaacgtacttcctcatttagatatatattttagggatccttacttttaatttacac 31343388  T
Q  108 gctaacggcttgcttaaactcacta 132  Q
     ||||  ||||  ||||||||||||    
T  31343389 actaatagctttattaaactcacta 31343413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 606 - 721
Target Start/End: Original strand, 21496366 - 21496480
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||| ||||||||||||||||| ||||||||| ||  ||||| ||||| | |  |||  |||||||||| ||||    
T  21496366 actccgttttcgaccctaaactcgccaaacacaaccctaatattcact-ccatgattatcccgtcatttaaacactgaaccttttttaacctaccggatt 21496464  T
Q  706 atccactctttttaag 721  Q
    ||||||||||||||||    
T  21496465 atccactctttttaag 21496480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 356
Target Start/End: Original strand, 20761652 - 20761798
Alignment:
Q  210 gtattttaatcataactaaacatctaaaaatgtaaatggagtccaaccagaaccaattgaaagttagaaaccatatatacaacttttgtgaagacaccca 309  Q
    ||||||||||||||||| ||  ||||||||| |||||||||| |||||| |   |  |||| ||||  |  ||||| ||| |||||| |||||||||  |    
T  20761652 gtattttaatcataactcaagttctaaaaatttaaatggagttcaaccaaattaagatgaatgttaatattcatatctacgacttttatgaagacactta 20761751  T
Q  310 aatctaattcgggacaaaaaatggtagaaaagttgattttcctaagc 356  Q
    || |||||||   ||| ||| ||||||||||||||||||||||||||    
T  20761752 aacctaattcaaaacagaaagtggtagaaaagttgattttcctaagc 20761798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 744 - 800
Target Start/End: Original strand, 21496509 - 21496565
Alignment:
Q  744 actaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatc 800  Q
    ||||||||||||||| |||||||| ||  ||||||||||||||| |||| |||||||    
T  21496509 actaaactagttttcgtcaattctcatcattcaacttcatctttcaatttgttcatc 21496565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 554
Target Start/End: Original strand, 17451123 - 17451218
Alignment:
Q  459 tgaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgcacggt 554  Q
    ||||| |||||||||||  ||| ||  || |||||||| || ||||| ||||| ||||||||||||| ||||| |||| |||| |||| |||||||    
T  17451123 tgaaatctaacatccatgtctataattttcatgaagacgcccaaacctaattcggaacttaaacttgccaaacagagacagtatgaaatgcacggt 17451218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 394 - 793
Target Start/End: Original strand, 988 - 1391
Alignment:
Q  394 cctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaa 493  Q
    ||||||| ||| ||||||||||| ||||| ||||  |||||||||| ||| ||||||||| | ||||| |  ||||||||||  ||||||| ||  ||||    
T  988 cctttgtagtaatttgatcatatcttgagttctatgtgcttaaatcgagttcctccaaagccgagtgacagataacatccatgtctacaactttcgtgaa 1087  T
Q  494 gacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctgcgatttcg 586  Q
    |||||||||||||| |||  ||||||||||||||||||||||| | ||| ||||       ||||  |||||||||| ||||||||  ||||||||||||    
T  1088 gacacctaaacccagttcgaaacttaaacttgtcaaactgagacaataa-aaacgcgttttgcacactgacagcaaagtcgcagttcagctgcgatttcg 1186  T
Q  587 -ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaatt 685  Q
     ||||||||||  |||||||||||||||||||||    ||||||||||||   ||||||||  | ||  | ||||| |||||||||||  |||| |||||    
T  1187 cctttggggaaatcttttcgactccgttttcgatacaatactctccaaacatgaccctaatcattac-cctatgataaccctatcattataacactaatt 1285  T
Q  686 cttcgttaacctaccagattatccactctttttaagtcnnnnnnncttaattcaaagtactaaactagttttcctcaattctgatatttcaacttcatct 785  Q
     ||| | |||||||   ||||||||||||||||||| |       || ||||| ||   |||||||||||||||| |||||| || |||||| |||||||    
T  1286 attcatcaacctactgtattatccactctttttaagac-tagaaactcaattcgaa-acctaaactagttttccttaattctcatctttcaatttcatct 1383  T
Q  786 tttaattc 793  Q
    ||||||||    
T  1384 tttaattc 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 75; Significance: 5e-34; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 287 - 721
Target Start/End: Original strand, 67738 - 68179
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||||||||||| | ||| |||||   | |||||| |||||||||| |||  || ||| ||  ||||  || ||||||     
T  67738 tacaactttcatgaagactcccaaatctaattcagaacagaaaatttcataaaagtggattttcctatgctcgggaaaagagggcgactgtgctgatccc 67837  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| |||| ||| ||| |||||| |||| ||||| ||||  |||||||||| ||| ||||||||| | ||||| |  || ||||||||  ||||||     
T  67838 tgctgacccctgtgtagtaatttgattatatcttgagttctatgtgcttaaatcgagtgcctccaaagccgagtgacagatatcatccatatatacaact 67937  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaa-acg-----cacggtgacagcaaaatcgcagttgtgctgc 579  Q
    ||  ||||| |||||||| ||| |||  ||||||||||||||||||||||| | ||| || |||     |||  |||||||||||||||||||  |||||    
T  67938 ttcgtgaaggcacctaaatccagttcgaaacttaaacttgtcaaactgagacaataaaaacacgttttgcacactgacagcaaaatcgcagttcagctgc 68037  T
Q  580 gatttcgc-tttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaac 678  Q
    |||||||| |||||||||  ||||||||||||||||||||||   ||||||||||||   ||||||||  | ||  | ||||| |||||||||||  |||    
T  68038 gatttcgcctttggggaaatcttttcgactccgttttcgatccaatactctccaaacatgaccctaattattac-cctatgatcaccctatcattataac 68136  T
Q  679 attaattcttcgttaacctaccagattatccactctttttaag 721  Q
    | ||||| ||| | |||||||   |||||||||||||||||||    
T  68137 actaattattcatcaacctactgtattatccactctttttaag 68179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 5e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 298 - 720
Target Start/End: Original strand, 27851658 - 27852087
Alignment:
Q  298 tgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcctt-ctgaaccct 396  Q
    ||||||| |||||| |||||||   ||| |||||   ||||||||||||||||||| |||  || ||| || |||||  || |||||| | |||| ||||    
T  27851658 tgaagactcccaaacctaattcaaaacagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccctgctgacccct 27851757  T
Q  397 ttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagac 496  Q
     ||| ||| ||||||||||  ||||| ||||  |||||||||| ||| ||||||||| |||| || |  |||||||||||  |||||| ||  ||| | |    
T  27851758 gtgtagtaatttgatcataacttgagttctatgtgcttaaatcgagtacctccaaagcctagggacagataacatccatatatacaactttcgtgagggc 27851857  T
Q  497 acctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctgcgatttcg-ct 588  Q
    ||||||||||| |||  |||||||||||||||||||| || | ||| ||||       ||||  ||| |||||||||||||||  |||||||||||| ||    
T  27851858 acctaaacccagttcgaaacttaaacttgtcaaactgcgacaataa-aaacgtgttttgcacattgatagcaaaatcgcagttcagctgcgatttcgcct 27851956  T
Q  589 ttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattctt 688  Q
    ||||||||  ||||||||||||||||||||||   ||||||||||||   ||||||||  | ||  | ||||| |||||||||||  |||| ||||| ||    
T  27851957 ttggggaaatcttttcgactccgttttcgatccaatactctccaaacatgaccctaatcattac-cctatgatcaccctatcattataacactaattatt 27852055  T
Q  689 cgttaacctaccagattatccactctttttaa 720  Q
    | | |||||||   ||||||||||||||||||    
T  27852056 catcaacctactgtattatccactctttttaa 27852087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 606 - 721
Target Start/End: Complemental strand, 19545430 - 19545316
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||| | |||||||| |||||| |||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  19545430 actccgttttcgaccctaaactcgccaaacccgaccctaatcttcact-ccatcatcaccctatcattcaaacactaattcttcgttaacctaccagatt 19545332  T
Q  706 atccactctttttaag 721  Q
    ||||||||||||||||    
T  19545331 atccactctttttaag 19545316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 406 - 721
Target Start/End: Complemental strand, 20733735 - 20733414
Alignment:
Q  406 tttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaaacc 505  Q
    ||||||||||  ||||| ||||  |||||||||| ||| ||||||||| | ||||| |  ||||||||||| ||||||| ||  ||||| ||||||||||    
T  20733735 tttgatcataacttgagttctatgtgcttaaatcgagtgcctccaaagccgagtgacagataacatccatatctacaactttcgtgaaggcacctaaacc 20733636  T
Q  506 caattcagaacttaaacttgtcaaactgagagagtaagaa------acgcacggtgacagcaaaatcgcagttgtgctgcgatttcg-ctttggggaacc 598  Q
    || |||  || ||||||| |||||||||||| | ||| ||        ||||   ||||||||||||||||||  |||||||||||| ||||||||||      
T  20733635 cagttcgaaatttaaactcgtcaaactgagacaataaaaatgcgttttgcacaccgacagcaaaatcgcagttcagctgcgatttcgcctttggggaaat 20733536  T
Q  599 cttttcgactccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaaccta 698  Q
    |||||| |||||||||||||||   ||||||||||||   ||||||||  | | | | ||||||||| |||||||  |||| ||||| ||| | ||||||    
T  20733535 cttttcaactccgttttcgatccaatactctccaaacatgaccctaatcatta-tcctatgattaccttatcattataacactaattattcatcaaccta 20733437  T
Q  699 ccagattatccactctttttaag 721  Q
    |   |||||||||||||||||||    
T  20733436 ctgtattatccactctttttaag 20733414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 10905833 - 10905669
Alignment:
Q  65 catttagatgtatagtttaaggactcatactttaaatctacacgctaacggcttgcttaaactcactaatgcactc--agatattttagagtccacttaa 162  Q
    |||||| ||| ||||||||||||| | |||||| | ||||| ||||||||||||||||||| |||||| ||| |||  |||| ||||||||||||||  |    
T  10905833 catttaaatgcatagtttaaggacccttacttttactctactcgctaacggcttgcttaaattcactattgctctcatagatgttttagagtccactaga 10905734  T
Q  163 atggtgatgctg-aagttttatggaaaacgcagcatgacccacatgcagtattttaatcataact 226  Q
      ||| | | || |||||   |||||||| |||||| |||||||||| |||||| ||||||||||    
T  10905733 cgggttacgttgaaagttcattggaaaactcagcataacccacatgcggtatttcaatcataact 10905669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 403 - 497
Target Start/End: Complemental strand, 19545816 - 19545722
Alignment:
Q  403 tattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagaca 497  Q
    |||||| ||||||| ||||| | ||||| |||||||  ||||||||||||||||||||||| |||||||| ||| |||| || || |||||||||    
T  19545816 tattttcatcatatcttgagttatagatacttaaatagagtccctccaaaggctagtgaaagctaacatcgatatctaccactttcatgaagaca 19545722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 625 - 721
Target Start/End: Complemental strand, 22395723 - 22395628
Alignment:
Q  625 actctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    ||||| ||||||| |||||||| |||||  || |||||| ||||||||||||||| ||||  || ||||||||||| |||||| |||||||||||||    
T  22395723 actcttcaaactcgaccctaatcttcacc-ccgtgattaacctatcattcaaacactaatcatttgttaacctaccggattattcactctttttaag 22395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 8402956 - 8402850
Alignment:
Q  28 aggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggcttgcttaaact 127  Q
    ||||||||||||||| |||||||| | ||||||  |||||||| ||||| || |||||||| |  ||||| | | ||||||||||||| ||  ||||| |    
T  8402956 aggtaatcacttctatttatgcctgatcacactccctcatttaaatgtaaagcttaaggaccctcacttttagtttacacgctaacggatttgttaaaat 8402857  T
Q  128 cactaat 134  Q
    |||||||    
T  8402856 cactaat 8402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 19326580 - 19326523
Alignment:
Q  169 atgctgaagttttatggaaaacgcagcatgacccacatgcagtattttaatcataact 226  Q
    |||||||| ||||||| |||||||||||||||| || || |||||||| |||||||||    
T  19326580 atgctgaaattttatgaaaaacgcagcatgacctacgtgtagtattttgatcataact 19326523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 657 - 717
Target Start/End: Original strand, 1254669 - 1254729
Alignment:
Q  657 atgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    ||||||||||||||||| |||||||||| | ||  ||||||||| ||||| ||||||||||    
T  1254669 atgattaccctatcattgaaacattaatccatcactaacctacccgattaaccactctttt 1254729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 717
Target Start/End: Original strand, 14746370 - 14746476
Alignment:
Q  610 cgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatcc 709  Q
    ||||||||||| |  |||| ||||||||||||||||| ||||| || | ||||| ||||||||| ||||| ||||  || |||||||||||  ||| | |    
T  14746370 cgttttcgatcctaaactcgccaaactcaaccctaatcttcac-tctacgattaacctatcattaaaacactaatcatttgttaacctaccgaattgttc 14746468  T
Q  710 actctttt 717  Q
    ||||||||    
T  14746469 actctttt 14746476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 904
Target Start/End: Complemental strand, 22395506 - 22395465
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctccc 904  Q
    |||||||||||||||||||| | |||||||||||| ||||||    
T  22395506 cccatcatatattaagataccctaaagtgcaaagactctccc 22395465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 625 - 811
Target Start/End: Complemental strand, 12118 - 11935
Alignment:
Q  625 actctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtcn 724  Q
    |||| |||||||| |||||||| | |||| |||| || | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  |     
T  12118 actcgccaaactcgaccctaatctgcact-ccatcatcaacctataattcaaacactaattcttcgttaacctaccagattatccactctttttaaaac- 12021  T
Q  725 nnnnnncttaattcaaagtactaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatcgtaaatctctc 811  Q
          || ||||||||   |||||||||||||||||| |||| ||  |||||||||||||||||||||||||||| ||||| ||||    
T  12020 -taaaactcaattcaaaaacctaaactagttttcctcatttctcatcattcaacttcatcttttaattcgttcatcataaatttctc 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 608 - 720
Target Start/End: Complemental strand, 27868561 - 27868450
Alignment:
Q  608 tccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattat 707  Q
    ||||||||||| | |  |||| |||||||||||||||||||||||| |||| || | |||||||||||||||| ||||||||||||||||||||||||||    
T  27868561 tccgttttcgaccctaaactcgccaaactcaaccctaatattcact-ccataatcaacctatcattcaaacatcaattcttcgttaacctaccagattat 27868463  T
Q  708 ccactctttttaa 720  Q
    |||||||||||||    
T  27868462 ccactctttttaa 27868450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 287 - 721
Target Start/End: Complemental strand, 52989469 - 52989028
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||| ||||||| | ||| |||||   |||||| |||||||||||| |||  || ||| || |||||  |||||||||     
T  52989469 tacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaaattgattttcctatgctcgggaaaagaggacgactgtgttgatccc 52989370  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| |||| ||| ||| ||||||||||| ||||| ||||  |||||||||  ||| ||||||||| | ||||| |  ||||||||||| |||||||     
T  52989369 tgctgacccctgtgtagtaatttgatcatatcttgagttctatgtgcttaaattgagtgcctccaaagccgagtgacagataacatccatatctacaact 52989270  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaa-ac-----gcacggtgacagcaaaatcgcagttgtgctgc 579  Q
    ||  ||||| |||||||| ||| |||  |||||||||||||||||||||||   ||| || ||     ||||  |||||||||||||| ||||  | |||    
T  52989269 ttcgtgaaggcacctaaatccagttcgaaacttaaacttgtcaaactgagactataaaaacacgttttgcacactgacagcaaaatcgtagttcagttgc 52989170  T
Q  580 gatttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaat-attcacttccatgattaccctatcattcaaa 677  Q
    ||||||| ||||||| ||  ||||||||||| ||||||||||   ||||||||||||   |||||||| |||  | |  ||||| |||||||||||  ||    
T  52989169 gatttcgcctttgggaaaatcttttcgactctgttttcgatccaatactctccaaacatgaccctaatcattatcat--atgatcaccctatcattataa 52989072  T
Q  678 cattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    || ||||| ||| | |||||||   |||||||||||||||||||    
T  52989071 cactaattattcatcaacctactgtattatccactctttttaag 52989028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 654 - 717
Target Start/End: Original strand, 10302601 - 10302664
Alignment:
Q  654 tccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10302601 tccatgattaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttt 10302664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 606 - 721
Target Start/End: Original strand, 22161555 - 22161669
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||||| ||||||||| | ||| |||||| |||||||||||||||||| ||||||||| |||||||||| ||||    
T  22161555 actccgttttcgaccctaaactcgccaaactcgaccctaatagttact-ccatgactaccctatcattcaaacactaattcttcattaacctacctgatt 22161653  T
Q  706 atccactctttttaag 721  Q
    ||||||||||||||||    
T  22161654 atccactctttttaag 22161669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 625 - 721
Target Start/End: Original strand, 21999379 - 21999474
Alignment:
Q  625 actctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    |||| |||||||| ||||||||||| ||| |||||| |||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  21999379 actcgccaaactcgaccctaatatttact-ccatgactaccctgtcattcaaacactaattcttcattaacctacctgattatccactctttttaag 21999474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 460 - 536
Target Start/End: Complemental strand, 3264351 - 3264275
Alignment:
Q  460 gaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgaga 536  Q
    |||| |||||||||||| ||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  3264351 gaaatctaacatccatacctacaactttcatgaagacacctaaacccagttcggaacttaaacttgtcaaactgaga 3264275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 335 - 502
Target Start/End: Complemental strand, 3264670 - 3264502
Alignment:
Q  335 agaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcctt-ctgaaccctttgtggtattttgatcatatattgagatctagatgct 433  Q
    |||||||||| ||||||||||||  |||||| ||||||||| ||||||||| | |||| | || ||| ||||||||||||||  ||||| ||||  ||||    
T  3264670 agaaaagttggttttcctaagctcggggaaagagcacgaccgtgttgatccctactgacctctgtgtagtattttgatcatagcttgagttctatgtgct 3264571  T
Q  434 taaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagacacctaa 502  Q
     ||||| |||  ||||||| |||||||| |  ||||||||||| ||||||| ||  |||||||||||||    
T  3264570 caaatcgagtgtctccaaatgctagtgacagataacatccatacctacaactttcgtgaagacacctaa 3264502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 625 - 717
Target Start/End: Original strand, 21976948 - 21977039
Alignment:
Q  625 actctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    |||| |||||||| ||||||||||| ||| |||||| |||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  21976948 actcgccaaactcgaccctaatatttact-ccatgactaccctgtcattcaaacactaattcttcattaacctacctgattatccactctttt 21977039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 335 - 484
Target Start/End: Original strand, 36528208 - 36528358
Alignment:
Q  335 agaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcctt-ctgaaccctttgtggtattttgatcatatattgagatctagatgct 433  Q
    |||||||||||||| ||||||||  |||||| |||||| || |||| |||| | |||| | || ||| ||||||||||||||  ||||| ||||  ||||    
T  36528208 agaaaagttgatttacctaagctcggggaaagagcacggccgtgtttatccctgctgacctctgtgtagtattttgatcataacttgagttctatgtgct 36528307  T
Q  434 taaatcaagtccctccaaaggctagtgaaacctaacatccataactacaac 484  Q
    |||||| ||| ||||||||||||||||| |  ||||||||||| |||||||    
T  36528308 taaatctagtgcctccaaaggctagtgacagataacatccatacctacaac 36528358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 625 - 717
Target Start/End: Original strand, 19186626 - 19186717
Alignment:
Q  625 actctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    |||| |||||||| ||| |||| |||||| |||||| |||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||    
T  19186626 actcgccaaactcgaccgtaatcttcact-ccatgactaccctatcattcaaacactaattctttgttaacctacctgattacccactctttt 19186717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 654 - 717
Target Start/End: Original strand, 10340927 - 10340990
Alignment:
Q  654 tccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10340927 tccataattaacctatcattcaaacactaattcttcgttaacctaccggattatccactctttt 10340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 466 - 635
Target Start/End: Original strand, 14966801 - 14966977
Alignment:
Q  466 taacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgc-------acggtgaca 558  Q
    |||||||||||  |||||| ||| ||||| ||||| |||||| |||  ||||||||||||||||| ||||| | ||| ||||||       ||  | |||    
T  14966801 taacatccatatatacaacttttgtgaaggcaccttaacccagttcgaaacttaaacttgtcaaaatgagacaataa-aaacgcgttttgcacactaaca 14966899  T
Q  559 gcaaaatcgcagttgtgctgcgatttcgc-tttggggaacccttttcgactccgttttcgatcatgtactctccaaac 635  Q
    ||||||||||||||  ||||||||||||| |||||||||  ||||||||||||||||||||||   ||||||||||||    
T  14966900 gcaaaatcgcagttcagctgcgatttcgcctttggggaaatcttttcgactccgttttcgatccaatactctccaaac 14966977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 607 - 712
Target Start/End: Complemental strand, 16358111 - 16358007
Alignment:
Q  607 ctccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatta 706  Q
    |||||||||||| | |  |||| ||||| || |||||||| |||||| |||||| |||||||||||| ||||| |||||||||| ||||||||| |||||    
T  16358111 ctccgttttcgaccctaaactcgccaaattcgaccctaatcttcact-ccatgactaccctatcattgaaacactaattcttcgctaacctacctgatta 16358013  T
Q  707 tccact 712  Q
    ||||||    
T  16358012 tccact 16358007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 21101543 - 21101470
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtt 81  Q
    |||||||| | |||||||||||||||||||||||  |||||||||||||||||| ||| ||||||| |||||||    
T  21101543 ttagactcaccatttccttaaggtaatcacttctttttatgcctaaacacacttcctcctttagatatatagtt 21101470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 460 - 635
Target Start/End: Original strand, 36528527 - 36528707
Alignment:
Q  460 gaaacctaacatccataactacaacgtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgc-------acg 552  Q
    |||| |||||||||||| ||||||| ||  ||   ||||||||||||| ||  |||||||||||||||||||||||| | |||  |||||       ||     
T  36528527 gaaagctaacatccatacctacaactttcgtgtttacacctaaacccagtttggaacttaaacttgtcaaactgagacaataa--aacgcgttttgaaca 36528624  T
Q  553 gtgacagcaaaatcgcagttgtgctgcgatttcgctttggggaacccttttcgactccgttttcgatcatgtactctccaaac 635  Q
     |||||||||||||||||||  ||||||||||||| ||||||||   ||||||| |||||||||||||   ||||||||||||    
T  36528625 ctgacagcaaaatcgcagttcagctgcgatttcgccttggggaaatattttcgattccgttttcgatccattactctccaaac 36528707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 5942587 - 5942515
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagt 80  Q
    |||||||||| |||||| ||||||||| ||||||| |||||| |||||||| || ||||||||||| ||||||    
T  5942587 ttagactcgccatttccataaggtaataacttctatttatgcataaacacagttcctcatttagatatatagt 5942515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 921
Target Start/End: Complemental strand, 16357867 - 16357810
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctccctatcacctcgaattctc 921  Q
    ||||||||| |||||||||| | |||||||||||||||||||  | |||||||||||||    
T  16357867 cccatcataaattaagataccctaaagtgcaaagattctccc-cttacctcgaattctc 16357810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 904
Target Start/End: Original strand, 10302785 - 10302826
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctccc 904  Q
    ||||||||| |||||||||| | |||||||||||||||||||    
T  10302785 cccatcatagattaagataccctaaagtgcaaagattctccc 10302826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 7e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 287 - 635
Target Start/End: Complemental strand, 19808005 - 19807649
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||||||||||| | ||| |||||   ||||||||||||||||||| |||  || ||| || |||||  || ||||||     
T  19808005 tacaactttcatgaagactcccaaatctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccc 19807906  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| || | ||| ||| ||||||||||| ||||| |||   |||||||||| ||| ||||||||| | ||||| |  ||||||||||| |||||||     
T  19807905 tgctgacccttgtgtagtaatttgatcatatcttgagttctttgtgcttaaatcgagtgcctccaaagccgagtgacagataacatccatatctacaact 19807806  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctg 578  Q
    |||  |||| |||||||||||| |||  ||||||||||||||||||||||| | ||| ||||       ||||  |||||||||||| ||||||   |||    
T  19807805 tttgcgaaggcacctaaacccagttcgaaacttaaacttgtcaaactgagacaataa-aaacgcgttttgcacattgacagcaaaattgcagttcaactg 19807707  T
Q  579 cgatttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaac 635  Q
    | |||||| ||||||  ||  ||||||||||||||||||||||   ||||||||||||    
T  19807706 caatttcgcctttggaaaaatcttttcgactccgttttcgatccaatactctccaaac 19807649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 287 - 635
Target Start/End: Complemental strand, 22237662 - 22237305
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||| ||||||| | ||| |||||   ||||||||||||||||||| |||  || ||| || |||||  || ||||||     
T  22237662 tacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccc 22237563  T
Q  387 t-ctgaaccctt-tgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaac 484  Q
    | |||| ||| | ||| ||| ||||||||||| ||||| ||||  |||| ||||  ||| ||||||||| | ||||| |  |||||| |||| |||||||    
T  22237562 tgctgaccccctgtgtagtaatttgatcatatcttgagttctatgtgctcaaattgagtgcctccaaagccgagtgacaaataacattcatatctacaac 22237463  T
Q  485 gtttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaa------acgcacggtgacagcaaaatcgcagttgtgctg 578  Q
     ||  ||||| |||||||||||| |||  |||||||| |||||||||||||| | ||| ||        ||||  |||||||||||||||||||  ||||    
T  22237462 tttcgtgaaggcacctaaacccagttcgaaacttaaatttgtcaaactgagacaataaaaatgcgtgttgcacactgacagcaaaatcgcagttcagctg 22237363  T
Q  579 cgatttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaac 635  Q
     ||||||| ||||||||||  ||||||||||||||||| ||||   ||||||||||||    
T  22237362 ggatttcgcctttggggaaatcttttcgactccgtttttgatccaatactctccaaac 22237305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 388 - 717
Target Start/End: Complemental strand, 21321656 - 21321322
Alignment:
Q  388 ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtt 487  Q
    |||| |||| ||| ||| ||||||||||  ||||| ||||  ||| |||||| ||| |||||||   ||||||| |  ||||||| ||| ||||||| ||    
T  21321656 ctgacccctgtgtagtaatttgatcataacttgagttctatgtgcctaaatcgagtgcctccaattcctagtgacagataacatctatatctacaacttt 21321557  T
Q  488 tatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaacgc-------acggtgacagcaaaatcgcagttgtgctgcg 580  Q
      ||||| |||||||||||| |||  |||||||||||||||||||| || | | | ||||||       ||  |||||||||||||||||||  ||||||    
T  21321556 cgtgaaggcacctaaacccagttcgaaacttaaacttgtcaaactgcgacaatga-aaacgcgtcttgcacactgacagcaaaatcgcagttcagctgcg 21321458  T
Q  581 atttcg-ctttggggaacccttttcgactccgttttcgatcatgtactctccaaactcaaccctaat-attcacttccatgattaccctatcattcaaac 678  Q
    |||||| ||||||||||  |||||||||||||| |||||||   ||||||||||||   |||||||| || | ||   ||||| ||||||||||| |||     
T  21321457 atttcgcctttggggaaatcttttcgactccgtgttcgatccaatactctccaaacatgaccctaatcataccct---atgatcaccctatcattaaaat 21321361  T
Q  679 attaattcttcgttaacctaccagattatccactctttt 717  Q
     ||||| | ||  ||||||||| ||||| ||||||||||    
T  21321360 gttaatccatcactaacctacctgattaaccactctttt 21321322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 670 - 800
Target Start/End: Original strand, 15727628 - 15727756
Alignment:
Q  670 cattcaaacattaattcttcgttaacctaccagattatccactctttttaagtcnnnnnnncttaattcaaagtactaaactagttttcctcaattctga 769  Q
    ||||||||||||| |  |||||||||||||| ||||||||||||||||||||         || |||||||| | | ||||||||||||||||||||| |    
T  15727628 cattcaaacattagtcattcgttaacctaccggattatccactctttttaaga-ataaaaactcaattcaaaat-caaaactagttttcctcaattctta 15727725  T
Q  770 tatttcaacttcatcttttaattcgttcatc 800  Q
    | |||||||||||||||||||||| ||||||    
T  15727726 tctttcaacttcatcttttaattcattcatc 15727756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 388 - 533
Target Start/End: Complemental strand, 21326254 - 21326109
Alignment:
Q  388 ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtt 487  Q
    |||| |||| ||| ||| ||||||||||  ||||| ||||  ||| |||||| ||| |||||||   ||||||| |  ||||||| ||| ||||||| ||    
T  21326254 ctgacccctgtgtagtaatttgatcataacttgagttctatgtgcctaaatcgagtgcctccaattcctagtgacagataacatctatatctacaacttt 21326155  T
Q  488 tatgaagacacctaaacccaattcagaacttaaacttgtcaaactg 533  Q
      ||||| ||||||||||||||||  ||||||||||||||||||||    
T  21326154 cgtgaaggcacctaaacccaattcgaaacttaaacttgtcaaactg 21326109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 658 - 800
Target Start/End: Original strand, 1683092 - 1683232
Alignment:
Q  658 tgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtcnnnnnnncttaattcaaagtactaaactagtttt 757  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||  || | |||||| ||| |       || ||||| ||   ||||| ||| |||    
T  1683092 tgattacactatcattcaaacactaattcttctttaacctaccagatcgtctaatcttttaaaggc-taaacactcaattcgaaaacctaaaatag-ttt 1683189  T
Q  758 cctcaattctgatatttcaacttcatcttttaattcgttcatc 800  Q
    ||| |||||| |||| |||||||||||||||||||||||||||    
T  1683190 ccttaattctcatatgtcaacttcatcttttaattcgttcatc 1683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 661 - 721
Target Start/End: Original strand, 19862149 - 19862209
Alignment:
Q  661 ttaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    |||||||| |||||||||||||||||| ||||||||||||  |||||| |  |||||||||    
T  19862149 ttaccctaacattcaaacattaattctccgttaacctacctaattatctaacctttttaag 19862209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 661 - 721
Target Start/End: Original strand, 19866786 - 19866846
Alignment:
Q  661 ttaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaag 721  Q
    |||||||| |||||||||||||||||| ||||||||||||  |||||| |  |||||||||    
T  19866786 ttaccctaacattcaaacattaattctccgttaacctacctaattatctaacctttttaag 19866846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 21326080 - 21326000
Alignment:
Q  556 acagcaaaatcgcagttgtgctgcgatttcgc-tttggggaacccttttcgactccgttttcgatcatgtactctccaaac 635  Q
    |||||||||||||||||  ||||||||| ||| |||||| ||  |||||||||||||| |||||||   ||||||||||||    
T  21326080 acagcaaaatcgcagttcagctgcgattccgcctttgggaaaatcttttcgactccgtgttcgatccaatactctccaaac 21326000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 657 - 717
Target Start/End: Complemental strand, 26859444 - 26859384
Alignment:
Q  657 atgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttt 717  Q
    |||||| ||||||||||  ||||  |||||||| |||||||||| ||||||||||||||||    
T  26859444 atgatttccctatcattagaacaccaattcttcattaacctacccgattatccactctttt 26859384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 708
Target Start/End: Complemental strand, 10454320 - 10454273
Alignment:
Q  661 ttaccctatcattcaaacattaattcttcgttaacctaccagattatc 708  Q
    |||||||||||| |||||| || |||||| ||||||||||||||||||    
T  10454320 ttaccctatcatccaaacactacttcttcattaacctaccagattatc 10454273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 287 - 620
Target Start/End: Original strand, 11341 - 11682
Alignment:
Q  287 tacaacttttgtgaagacacccaaatctaattcgggacaaaaaatggtagaaaagttgattttcctaagcttagggaaaaagcacgaccttgttgatcct 386  Q
    |||||||||  ||||||| |||||| ||||||| | | | |||||   ||||||||||||||||||| |||  || ||| || |||||  || ||||||     
T  11341 tacaactttcatgaagactcccaaacctaattcagaatagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccc 11440  T
Q  387 t-ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacg 485  Q
    | |||| |||| ||| ||| ||||||||||| ||||| ||||  ||||||| || |||  |||||||| | ||||| |  ||||||||||| |||||||     
T  11441 tgctgacccctgtgtagtaatttgatcatatcttgagttctatgtgcttaattcgagtttctccaaagccgagtgacagataacatccatatctacaact 11540  T
Q  486 tttatgaagacacctaaacccaattcagaacttaaacttgtcaaactgagagagtaagaaac-------gcacggtgacagcaaaatcgcagttgtgctg 578  Q
    ||  ||||| |||||||||||| |||  ||| ||||||||||||||||||| | ||| ||||       ||||  ||| | |||||||||||||  ||||    
T  11541 ttcgtgaaggcacctaaacccagttcgaaacctaaacttgtcaaactgagacaataa-aaacgtgttttgcacactgatatcaaaatcgcagttcagctg 11639  T
Q  579 cgatttcg-ctttggggaacccttttcgactccgttttcgatc 620  Q
    |||||||| ||||||||||  ||||||||||||||||||||||    
T  11640 cgatttcgcctttggggaaatcttttcgactccgttttcgatc 11682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 630 - 800
Target Start/End: Original strand, 15980 - 16147
Alignment:
Q  630 ccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatccactctttttaagtcnnnnnn 729  Q
    ||||||||  |||||||||||||| |||||| |||||||| ||||||||| ||||||||| |||| ||||| |||||||||||||||||||| |          
T  15980 ccaaactcggccctaatattcact-ccatgactaccctatgattcaaacactaattcttcattaaactacctgattatccactctttttaagac--taaa 16076  T
Q  730 ncttaattcaaagtactaaactagttttcctcaattctgatatttcaacttcatcttttaattcgttcatc 800  Q
     || ||||||||    |||||||||||||||||||| | || |||||| ||||||||| ||||||||||||    
T  16077 actcaattcaaaaacttaaactagttttcctcaattgtcatctttcaatttcatctttcaattcgttcatc 16147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 921
Target Start/End: Original strand, 16211 - 16269
Alignment:
Q  863 cccatcatatattaagatactcaaaagtgcaaagattctccctatcacctcgaattctc 921  Q
    ||||||||| |||||||||| | ||||| |||||||||||||  | |||||||||||||    
T  16211 cccatcataaattaagataccctaaagtacaaagattctcccccttacctcgaattctc 16269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 606 - 721
Target Start/End: Original strand, 11779 - 11893
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||||| |||||||| |||||| |||||| |||||||||||||||||| ||||||||||| |||||||  ||||    
T  11779 actccgttttcgaccctaaactcaccaaactcgaccctaatcttcact-ccatgactaccctatcattcaaacactaattcttcgtgaacctacttgatt 11877  T
Q  706 atccactctttttaag 721  Q
    ||||||||||||||||    
T  11878 atccactctttttaag 11893  T

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Target: scaffold0094 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 606 - 721
Target Start/End: Complemental strand, 2785 - 2671
Alignment:
Q  606 actccgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagatt 705  Q
    ||||||||||||| | |  |||| |||||| |||||| ||| |||||| |||| || ||||||| ||||||||| ||||||||||||||||| |||||||    
T  2785 actccgttttcgaccctaaactcgccaaacccaacccgaatcttcact-ccatcatcaccctattattcaaacactaattcttcgttaacctgccagatt 2687  T
Q  706 atccactctttttaag 721  Q
    ||||||||||||||||    
T  2686 atccactctttttaag 2671  T

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Target: scaffold0094; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 403 - 497
Target Start/End: Complemental strand, 3172 - 3078
Alignment:
Q  403 tattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtttatgaagaca 497  Q
    |||||| ||||||| ||||| | ||||| |||||||  | ||| ||||||||||||||||| |||||||| ||| ||||||| || |||||||||    
T  3172 tattttcatcatatcttgagttatagatacttaaatagactccatccaaaggctagtgaaagctaacatcgatatctacaactttcatgaagaca 3078  T

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Target: scaffold1405 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 388 - 510
Target Start/End: Original strand, 1305 - 1427
Alignment:
Q  388 ctgaaccctttgtggtattttgatcatatattgagatctagatgcttaaatcaagtccctccaaaggctagtgaaacctaacatccataactacaacgtt 487  Q
    |||| |||| ||| ||||||| ||||||||||||| ||||||| |||||||  |||||||| ||||||||||||||  ||||||||||| ||||||| ||    
T  1305 ctgacccctgtgtagtattttcatcatatattgagttctagatacttaaatagagtccctctaaaggctagtgaaatttaacatccatatctacaacttt 1404  T
Q  488 tatgaagacacctaaacccaatt 510  Q
     | ||||||| | ||||| ||||    
T  1405 cacgaagacatcaaaacctaatt 1427  T

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Target: scaffold1405; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 953 - 1008
Alignment:
Q  28 aggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagttta 83  Q
    |||||||| |||||||||||||||||||| |||||||||||||||| |||||||||    
T  953 aggtaatcccttctaattatgcctaaacatactttctcatttagatatatagttta 1008  T

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Target: scaffold0007 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 172956 - 172897
Alignment:
Q  24 cttaaggtaatcacttctaattatgcctaaacacactttctcatttagatgtatagttta 83  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||    
T  172956 cttaaggtaatcacttctatttatgcctaaacacacttcctcatttaggtatatagttta 172897  T

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Target: scaffold0010 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 744 - 811
Target Start/End: Original strand, 143048 - 143116
Alignment:
Q  744 actaaactagttttcctcaattctgatatttcaacttcatctttt-aattcgttcatcgtaaatctctc 811  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||| | ||||||||    
T  143048 actaaactagttttcctcaattctcatctttcaacttcatcttttcaatttgttcatcatcaatctctc 143116  T

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Target: scaffold0166 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 2867 - 2926
Alignment:
Q  8 ttagactcgctatttccttaaggtaatcacttctaattatgcctaaacacactttctcat 67  Q
    |||||||| | |||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  2867 ttagactcaccattttcttaaggtaatcacttctatttatgcctaaacacacttcctcat 2926  T

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Target: scaffold1559 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1559
Description:

Target: scaffold1559; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 924 - 882
Alignment:
Q  182 atggaaaacgcagcatgacccacatgcagtattttaatcataa 224  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  924 atggaaaacgcagcatgacccacatgcggtattttaatcataa 882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 744 - 800
Target Start/End: Original strand, 18097 - 18154
Alignment:
Q  744 actaaactagttttcctcaattctgatatttcaacttcatc-ttttaattcgttcatc 800  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  18097 actaaactagttttcctcaattctcgtctttcaacttcatctttttaattcgttcatc 18154  T

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Target: scaffold0048 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 53332 - 53463
Alignment:
Q  30 gtaatcacttctaattatgcctaaacacactttctcatttagatgtatagtttaaggactcatactttaaatctacacgctaacggcttgcttaaactca 129  Q
    |||||| ||| || ||||||||||||||| |  | |||||| ||| ||||||| ||||| | || ||| | | ||| ||||||||||||||||||| |||    
T  53332 gtaatcgcttgtatttatgcctaaacacagtcacccatttaaatgcatagttttaggacccttaattttactatactcgctaacggcttgcttaaattca 53431  T
Q  130 ctaatgcactc--agatattttagagtccact 159  Q
    ||| ||| |||  |||| |||| |||||||||    
T  53432 ctattgctctcatagatgttttggagtccact 53463  T

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Target: scaffold0481 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 661 - 700
Target Start/End: Complemental strand, 11475 - 11436
Alignment:
Q  661 ttaccctatcattcaaacattaattcttcgttaacctacc 700  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  11475 ttaccctaacattcaaacattaattctccgttaacctacc 11436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 717
Target Start/End: Original strand, 14806 - 14912
Alignment:
Q  610 cgttttcgatcatgtactctccaaactcaaccctaatattcacttccatgattaccctatcattcaaacattaattcttcgttaacctaccagattatcc 709  Q
    ||||||||||| |  |||| ||||||||||||||||| ||||| || | ||||| ||||||||| ||||| ||||  || |||||||||||  ||| | |    
T  14806 cgttttcgatcctaaactcgccaaactcaaccctaatcttcac-tctacgattaacctatcattaaaacactaatcatttgttaacctaccgaattgttc 14904  T
Q  710 actctttt 717  Q
    ||||||||    
T  14905 actctttt 14912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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