View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475-Insertion-6 (Length: 883)
Name: NF4475-Insertion-6
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 621; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 772
Target Start/End: Complemental strand, 42558941 - 42558141
Alignment:
| Q |
8 |
gtttagacgtgcttagttactctgttaattcttttaggtttactaatttgaaatttaatgatacaaaaaatgctaggttttcacaagtggttagaatgca |
107 |
Q |
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| T |
42558941 |
gtttagacgtgcttagttactctgttaattcttttaggtttactaatttgaaatttaatgatacaaaaaatgctaggttttcacaagtggttagaatgca |
42558842 |
T |
|
| Q |
108 |
actcaatcaaactgacacccagagggttttagatgtaagccctaatctattttatgtttggtaccgctaatcaccatgattttttcaaaaccgcatatt- |
206 |
Q |
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| T |
42558841 |
actcaatcaaactgacaccaagagggttttagatgtaagccctaatctattttatgtttggtaccgcgaatcaccatgattttttcaaaacctcatattg |
42558742 |
T |
|
| Q |
207 |
----------------atagcgattcttgttaaccaaagtggtatcaaacataggagcttatatttttccc--------tctctcttttaccaattaatt |
282 |
Q |
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| T |
42558741 |
tagcttcttcaaaattatagcgattcttgttaaccaaagtgatatcaaacatatgagcttatatttttccccccctctctctctcttttaccaattaatt |
42558642 |
T |
|
| Q |
283 |
tgatatttgtatgagtgaaatgaaatttgtactatttcagggttgtaagcagagtaggattaagctgtgtggagcaataactgcagcgggattaatggct |
382 |
Q |
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| T |
42558641 |
tgatatttgtatgtgtgaaatgaaatttgtactatttcagggttgtaagcagagtaggattaagctgtgtggagcaataactgcagcgggattaatggct |
42558542 |
T |
|
| Q |
383 |
gcacatagcaacaagaataatagttctaagaattacgggattattaccctcactgattgccggtccactcttgagccacctctctcaaatcacaattttg |
482 |
Q |
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| T |
42558541 |
gcacatagcaacaagactaatagttctaagaagtacgggattattaccctcactgattgccggtccactcttgacccacctctctcaaatcacaattttg |
42558442 |
T |
|
| Q |
483 |
gtatgtttatcacttgcatttactaaattttgtactaaactttttgtttatgaggacagaaaattgatttatggtaattagagtaataattcttgatcta |
582 |
Q |
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| T |
42558441 |
gtatgtttatcacttgcatttactaaattttgtactaaactttttgtttatgaggacagaaaattgatttatggtaattagagtaataattcttgatcta |
42558342 |
T |
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| Q |
583 |
gaaccattaatatggatatggaaacagaagtaaagtactta--------tgaccaatcaacattcattccttattcgtgaaaagaaaaactgacactgca |
674 |
Q |
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| T |
42558341 |
gaaccattaatatggatatggaaacagaagttcagtacttatatacaactgaccaatcaacattcattccttattcgtaaaaagaaaaactgacactgca |
42558242 |
T |
|
| Q |
675 |
gctggtagtgtactatttatagtaacagcaagcagaactttgcgtacaggcataaa---tgcattaaaaacttttgaatgatttttgtaaggaatctaaa |
771 |
Q |
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| T |
42558241 |
gctggtagtgtactatttatagtaacagcaagcagaactttgcgtacaggcataaatgttgcattaaaaacttttgaatgatttttttaaggaatctaaa |
42558142 |
T |
|
| Q |
772 |
a |
772 |
Q |
| |
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| T |
42558141 |
a |
42558141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 798 - 880
Target Start/End: Complemental strand, 42558114 - 42558032
Alignment:
| Q |
798 |
ctttcaaaattcatttaagtatacataatttacacattnnnnnnnngtacgtaagttcgtaaaaattaactcaattggcaatg |
880 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
42558114 |
ctttcaaaattcattaaagtatacataatttacgtattaaaaaaaagtatgtaagttcgtaaaaattaactcaattggcaatg |
42558032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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