View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4475-Insertion-7 (Length: 778)

Name: NF4475-Insertion-7
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4475-Insertion-7
NF4475-Insertion-7
[»] chr4 (9 HSPs)
chr4 (8-267)||(23259695-23259964)
chr4 (290-466)||(23259992-23260168)
chr4 (291-466)||(11134927-11135102)
chr4 (291-466)||(27543917-27544092)
chr4 (291-466)||(23277891-23278066)
chr4 (481-580)||(33754247-33754345)
chr4 (468-510)||(14800360-14800404)
chr4 (181-230)||(27543816-27543865)
chr4 (475-510)||(47825599-47825634)
[»] chr1 (4 HSPs)
chr1 (631-775)||(52801647-52801791)
chr1 (469-508)||(48183914-48183953)
chr1 (468-510)||(26354696-26354739)
chr1 (560-593)||(52801798-52801831)
[»] chr7 (7 HSPs)
chr7 (299-466)||(12280071-12280238)
chr7 (469-541)||(44660056-44660128)
chr7 (467-510)||(25533962-25534005)
chr7 (468-510)||(21358377-21358419)
chr7 (468-561)||(12003283-12003377)
chr7 (468-561)||(21453133-21453227)
chr7 (668-707)||(12003135-12003174)
[»] chr8 (3 HSPs)
chr8 (467-544)||(43915827-43915902)
chr8 (668-707)||(34213059-34213098)
chr8 (467-510)||(1667822-1667867)
[»] chr5 (6 HSPs)
chr5 (468-544)||(43299937-43300014)
chr5 (467-510)||(3173849-3173893)
chr5 (468-510)||(18740038-18740081)
chr5 (467-510)||(21745035-21745080)
chr5 (467-510)||(42740890-42740935)
chr5 (468-510)||(32863333-32863377)
[»] chr2 (1 HSPs)
chr2 (468-510)||(25697957-25697998)
[»] scaffold0005 (1 HSPs)
scaffold0005 (468-510)||(39323-39367)
[»] chr6 (2 HSPs)
chr6 (668-707)||(14654743-14654782)
chr6 (468-510)||(16497562-16497606)
[»] chr3 (3 HSPs)
chr3 (467-510)||(2339181-2339226)
chr3 (481-510)||(2733346-2733375)
chr3 (468-510)||(52893141-52893185)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 23259695 - 23259964
Alignment:
Q  8 ttaagtgacttttattctgttatacaaacacaaaacaacttcaacctacgacatagacatcagatatatcactaacacataaaacttttaaaaagaaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23259695 ttaagtgacttttattctgttatacaaacacaaaacaacttcaacctacgacatagacatcagatatgtcactaacacataaaacttttaaaaagaaatt 23259794  T
Q  108 aatcgaatgtattcacgtgttgatgtaagtagacacacggtcttcaatcaaaagcattgatactacatatgataatttaaattgctatcatatccccaat 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259795 aatcgaatgtaatcacgtgttgatgtaagtagacacacggtcttcaatcaaaagcattgatactacatatgataatttaaattgctatcatatccccaat 23259894  T
Q  208 aaagtgatcaaca----------taaaaacaatcaagctgaatcaaaattataaaacaaataattatcat 267  Q
    |||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  23259895 aaagtgatcaacataaaaacaattaaaaacaatcaagctgaatcaaaattataaaacaaataattatcat 23259964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 290 - 466
Target Start/End: Original strand, 23259992 - 23260168
Alignment:
Q  290 gaagatgaattagatcatgaaagtttcgttaccttgaagaacataagcaaccttagaagaatcagagtacctcggaacagcaaaaccattcttgtgaaga 389  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259992 gaagatgaattagatcatgaaagtttggttaccttgaagaacataagcaaccttagaagaatcagagtacctcggaacagcaaaaccattcttgtgaaga 23260091  T
Q  390 gctaacttggcagcaccaatgttaccttgacgcaacataggaagctcagaaggagacctagcatagtacgatccacc 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23260092 gctaacttggcagcaccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcatagtacgatccacc 23260168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 291 - 466
Target Start/End: Complemental strand, 11135102 - 11134927
Alignment:
Q  291 aagatgaattagatcatgaaagtttcgttaccttgaagaacataagcaaccttagaagaatcagagtacctcggaacagcaaaaccattcttgtgaagag 390  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||    
T  11135102 aagatgaattaaatcatgaaactttggttaccttgaagaacataagcaaccttagaagaatcagaataccttggaacagcaaaaccattcttctcaagag 11135003  T
Q  391 ctaacttggcagcaccaatgttaccttgacgcaacataggaagctcagaaggagacctagcatagtacgatccacc 466  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  11135002 ctaacttggcagcaccaatgttaccttcacgtaacataggaagctcagaaggagaccaagcatagtacgatccacc 11134927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 291 - 466
Target Start/End: Original strand, 27543917 - 27544092
Alignment:
Q  291 aagatgaattagatcatgaaagtttcgttaccttgaagaacataagcaaccttagaagaatcagagtacctcggaacagcaaaaccattcttgtgaagag 390  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  27543917 aagatgaattagatgatgaaagtttatttaccttgaagaacataagcaaccttggaagaatcagaataccttggaacagcaaaaccattcttgtgaagag 27544016  T
Q  391 ctaacttggcagcaccaatgttaccttgacgcaacataggaagctcagaaggagacctagcatagtacgatccacc 466  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||    
T  27544017 ctaacttggcagcaccaatgttaccttcacgcaacataggaagttcagaaggagaccatgcatagtacgatccacc 27544092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 291 - 466
Target Start/End: Original strand, 23277891 - 23278066
Alignment:
Q  291 aagatgaattagatcatgaaagtttcgttaccttgaagaacataagcaaccttagaagaatcagagtacctcggaacagcaaaaccattcttgtgaagag 390  Q
    |||| ||||||||| ||||||||||  |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| |    
T  23277891 aagacgaattagataatgaaagtttatttaccttgaagaacataagcaaccttggaagaatcagagtatctcggaacagcaaaaccgttcttctgaagcg 23277990  T
Q  391 ctaacttggcagcaccaatgttaccttgacgcaacataggaagctcagaaggagacctagcatagtacgatccacc 466  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  23277991 ctaacttggcagcaccaatgttaccttcacgcaacataggaagctcagaaggtgaccaagcgtagtacgatccacc 23278066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 580
Target Start/End: Complemental strand, 33754345 - 33754247
Alignment:
Q  481 ggggtggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttcattattattaatattttcatattcaatctcatttggt 580  Q
    ||||||||||||||||||||| |||||||| ||||  |  |||||||||| ||| |||||||||||| || ||||||||||   |||||| |||||||||    
T  33754345 ggggtggcaagggggagccaccgccacccc-attacatcatggaaattactattttacccttcattaatagtaatattttctatttcaatttcatttggt 33754247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 14800404 - 14800360
Alignment:
Q  468 cagtggcggaact--ggggtggcaagggggagccacagccacccc 510  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  14800404 cagtggcggaactagggggtggcaagggggagccacagccacccc 14800360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 27543816 - 27543865
Alignment:
Q  181 aatttaaattgctatcatatccccaataaagtgatcaacataaaaacaat 230  Q
    ||||||||||||||||||| |||| || |||||||||||| |||||||||    
T  27543816 aatttaaattgctatcataaccccgattaagtgatcaacacaaaaacaat 27543865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 475 - 510
Target Start/End: Original strand, 47825599 - 47825634
Alignment:
Q  475 ggaactggggtggcaagggggagccacagccacccc 510  Q
    ||||||||||||||||||||||||||| ||||||||    
T  47825599 ggaactggggtggcaagggggagccaccgccacccc 47825634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 1e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 631 - 775
Target Start/End: Complemental strand, 52801791 - 52801647
Alignment:
Q  631 ttctcccaacaacaaagcaaatcgagtccagacaacccaaccaccacactaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc 730  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52801791 ttctcccaacaacaaagcaaatcgagtcaagacaacccaaccaccacaccaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc 52801692  T
Q  731 atcacccgccgacgcatcctcctgacctcctccatcttctgtgtt 775  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  52801691 atcacccgccggcgcatcctcctgacctcctccatcttctgtgtt 52801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 469 - 508
Target Start/End: Original strand, 48183914 - 48183953
Alignment:
Q  469 agtggcggaactggggtggcaagggggagccacagccacc 508  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  48183914 agtggcggaactggggtggcaagggggagccaccgccacc 48183953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 26354696 - 26354739
Alignment:
Q  468 cagtggcggaactgg-ggtggcaagggggagccacagccacccc 510  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  26354696 cagtggcggaactggaggtggcaagggggagccaccgccacccc 26354739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 593
Target Start/End: Complemental strand, 52801831 - 52801798
Alignment:
Q  560 tcatattcaatctcatttggtcttgctgtttctc 593  Q
    |||||||||||||||||||||||||| |||||||    
T  52801831 tcatattcaatctcatttggtcttgccgtttctc 52801798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 9e-66; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 299 - 466
Target Start/End: Complemental strand, 12280238 - 12280071
Alignment:
Q  299 ttagatcatgaaagtttcgttaccttgaagaacataagcaaccttagaagaatcagagtacctcggaacagcaaaaccattcttgtgaagagctaacttg 398  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||| ||||||||     
T  12280238 ttagatcaagaaagtttggttaccttgaagaacataagcaaccttagaagaatcagaatacatcggaacaacaaaaccattcttctgaagcgctaactta 12280139  T
Q  399 gcagcaccaatgttaccttgacgcaacataggaagctcagaaggagacctagcatagtacgatccacc 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  12280138 gcagcaccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcagagtacgatccacc 12280071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 44660056 - 44660128
Alignment:
Q  469 agtggcggaactggggtggcaagggggagccacagccacccccattatttgctggaaattaccattataccct 541  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| | | | ||||||||| ||||||||||    
T  44660056 agtgccggaactggggtggcaagggggagccaccgccacccccattgtatacaggaaattacaattataccct 44660128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 25533962 - 25534005
Alignment:
Q  467 gcagtggcggaactggggtggcaagggggagccacagccacccc 510  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  25533962 gcagtggcggaactggggtggcaagggggagccaccgccacccc 25534005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 21358419 - 21358377
Alignment:
Q  468 cagtggcggaactggggtggcaagggggagccacagccacccc 510  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  21358419 cagtggcggaactggggtggtaagggggagccaccgccacccc 21358377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 12003377 - 12003283
Alignment:
Q  468 cagtggcggaactgggg--tggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttcattattattaatattttc 561  Q
    |||||||||||||||||  |||||||| |||||||| |||| ||||||  |||  |||||||||| ||||| ||||||||||  | ||||||||||    
T  12003377 cagtggcggaactggggggtggcaaggaggagccaccgcca-ccccatccttttatggaaattactattatgcccttcattaaaactaatattttc 12003283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 468 - 561
Target Start/End: Complemental strand, 21453227 - 21453133
Alignment:
Q  468 cagtggcggaactgggg--tggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttcattattattaatattttc 561  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||||  |||  |||||||| | ||||| ||||||||||  | ||||||||||    
T  21453227 cagtggcggaactggggggtggcaagggggagccaccgcca-ccccatccttttatggaaattcctattatgcccttcattaaaactaatattttc 21453133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 707
Target Start/End: Complemental strand, 12003174 - 12003135
Alignment:
Q  668 caaccaccacactaccgccggccagccgccgcgaccactc 707  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  12003174 caaccaccacaccaccgccggtcagccgccgcgaccactc 12003135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 467 - 544
Target Start/End: Original strand, 43915827 - 43915902
Alignment:
Q  467 gcagtggcggaactggggtggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttca 544  Q
    |||||||| ||||||||||||||||| |||||||| ||||  |||||||||| | ||||||||| |||||||||||||    
T  43915827 gcagtggctgaactggggtggcaaggaggagccaccgcca--cccattatttacaggaaattactattatacccttca 43915902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 707
Target Start/End: Complemental strand, 34213098 - 34213059
Alignment:
Q  668 caaccaccacactaccgccggccagccgccgcgaccactc 707  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  34213098 caaccaccacaccaccgccggtcagccgccgcgaccactc 34213059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 1667822 - 1667867
Alignment:
Q  467 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 510  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  1667822 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 1667867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 544
Target Start/End: Original strand, 43299937 - 43300014
Alignment:
Q  468 cagtggcggaactggggt-ggcaagggggagccacagccacccccattatttgctggaaattaccattatacccttca 544  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| | | |  |||||||| |||||||||||||    
T  43299937 cagtggcggaactggggttggcaagggggagccaccgccacccccattgtatacaagaaattactattatacccttca 43300014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 3173849 - 3173893
Alignment:
Q  467 gcagtggcggaactgggg-tggcaagggggagccacagccacccc 510  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||    
T  3173849 gcagtggcggaactgggggtggcaagggggagccaccgccacccc 3173893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 18740081 - 18740038
Alignment:
Q  468 cagtggcggaactggggt-ggcaagggggagccacagccacccc 510  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  18740081 cagtggcggaactggggttggcaagggggagccaccgccacccc 18740038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 510
Target Start/End: Complemental strand, 21745080 - 21745035
Alignment:
Q  467 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 510  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  21745080 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 21745035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 510
Target Start/End: Complemental strand, 42740935 - 42740890
Alignment:
Q  467 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 510  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  42740935 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 42740890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 32863333 - 32863377
Alignment:
Q  468 cagtggcggaactgggg--tggcaagggggagccacagccacccc 510  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  32863333 cagtggcggaactggggggtggcaagggggagccaccgccacccc 32863377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 25697998 - 25697957
Alignment:
Q  468 cagtggcggaactggggtggcaagggggagccacagccacccc 510  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  25697998 cagtggcggaactggggtggcaagggggagccac-gccacccc 25697957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 39323 - 39367
Alignment:
Q  468 cagtggcggaact--ggggtggcaagggggagccacagccacccc 510  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  39323 cagtggcggaactagggggtggcaagggggagccacagccacccc 39367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 707
Target Start/End: Complemental strand, 14654782 - 14654743
Alignment:
Q  668 caaccaccacactaccgccggccagccgccgcgaccactc 707  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  14654782 caaccaccacaccaccgccggtcagccgccgcgaccactc 14654743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 16497606 - 16497562
Alignment:
Q  468 cagtggcggaactg--gggtggcaagggggagccacagccacccc 510  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||    
T  16497606 cagtggcggaactgcggggtggcaagggggagccaccgccacccc 16497562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 510
Target Start/End: Complemental strand, 2339226 - 2339181
Alignment:
Q  467 gcagtggcggaactgggg--tggcaagggggagccacagccacccc 510  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  2339226 gcagtggcggaactggggggtggcaagggggagccaccgccacccc 2339181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 510
Target Start/End: Original strand, 2733346 - 2733375
Alignment:
Q  481 ggggtggcaagggggagccacagccacccc 510  Q
    ||||||||||||||||||||||||||||||    
T  2733346 ggggtggcaagggggagccacagccacccc 2733375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 510
Target Start/End: Original strand, 52893141 - 52893185
Alignment:
Q  468 cagtggcggaactgggg--tggcaagggggagccacagccacccc 510  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||    
T  52893141 cagtggcggaactgggggttggcaagggggagccaccgccacccc 52893185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University