View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4475-Insertion-9 (Length: 481)

Name: NF4475-Insertion-9
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4475-Insertion-9
NF4475-Insertion-9
[»] chr3 (9 HSPs)
chr3 (8-465)||(24923685-24924154)
chr3 (8-402)||(25084587-25084995)
chr3 (8-328)||(24981681-24982003)
chr3 (30-339)||(31825804-31826122)
chr3 (12-125)||(24497488-24497602)
chr3 (8-341)||(24920111-24920438)
chr3 (8-107)||(21584822-21584921)
chr3 (231-329)||(21585021-21585119)
chr3 (248-326)||(24497734-24497812)
[»] chr8 (1 HSPs)
chr8 (12-89)||(14261261-14261338)
[»] chr7 (2 HSPs)
chr7 (12-139)||(10575217-10575340)
chr7 (15-88)||(39955077-39955150)
[»] chr1 (1 HSPs)
chr1 (115-203)||(52794301-52794390)
[»] chr5 (2 HSPs)
chr5 (115-147)||(9671462-9671494)
chr5 (115-147)||(13374415-13374447)
[»] chr4 (1 HSPs)
chr4 (115-147)||(35785760-35785792)
[»] chr2 (1 HSPs)
chr2 (115-147)||(42929863-42929895)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 24923685 - 24924154
Alignment:
Q  8 gttatcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcgagaaaa-tttgagaa 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||  ||||||| ||||||||    
T  24923685 gttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacctgacattttcaagagaaaactttgagaa 24923784  T
Q  107 aac-aaagagaaaatttgggaaattaggg---------tttgaatttgaattgttgtgggaaagagagaa-gcggatctgagtatttattaatggtaatt 195  Q
    ||| ||| | ||||||||||||||||| |         |||||||| ||||    ||| ||||  | ||| | |||||||||||||||| ||||||||||    
T  24923785 aacgaaatacaaaatttgggaaattagagaaattaggatttgaattcgaatgtgagtgagaaaaggtgaaaggggatctgagtatttatcaatggtaatt 24923884  T
Q  196 ggtagcgagagcgggaggaagaagagggaactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcg 295  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24923885 ggtagtgagagcgggaggaagaagagggaactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttatattagcgatccgtgcg 24923984  T
Q  296 tattgagaaaatgaatagtgaacgtcgataagtttatttgaacggtgagatatcattttggatacgcctgtgcggatcagcactttcttcctttgcgtta 395  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24923985 tattgagaaaaagaatagtgaacgtcgataagtttatttgaacggtgagatatcattttggattcgcctgtgcggatcagcactttcttcctttgcgtta 24924084  T
Q  396 gtttttgtatttccccagctcaggtagactacttctccgaggagtacttttttgtcaactgatatcatta 465  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  24924085 gtttttgtgtttccccagctcagctagactacttctccgaggagtacttttttgtcaactaatatcatta 24924154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 25084995 - 25084587
Alignment:
Q  8 gttatcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcgagaaaatttgagaaa 107  Q
    |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25084995 gttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgacattttcgcgagaaaatttgagaaa 25084896  T
Q  108 acaaagagaaaatttgggaaattaggg----------tttgaatttgaattg--ttgtg----ggaaagagagaagcggatctgagtatttattaatggt 191  Q
    || || |||||||| |||||||||| |          |||||||||||||||  |||||    |||||||||||| ||||||||||||||||| ||||||    
T  25084895 acgaaaagaaaattagggaaattagagaaattagggttttgaatttgaattgaattgtgagtgggaaagagagaaacggatctgagtatttatgaatggt 25084796  T
Q  192 aattggtagcgagagcgggaggaagaagagggaa-ctcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatcc 290  Q
    | |||||||| ||  ||||| ||| ||||||||| ||||| ||||||||||  ||||||||||||||||| || |||| |||||| ||||||||||||||    
T  25084795 agttggtagctag--cgggatgaataagagggaaactcaaatttgtgtttttctctgcgtcgttggatttcaacttattgacggtctaaattagcgatcc 25084698  T
Q  291 gtgcgtattgagaaaatgaatagtgaacgtcgataagtttatttgaacggtgagatatcattttggatacgcctgtgcggatcagcactttcttcctttg 390  Q
    ||||||||||||||||  |||| ||| ||||||| ||| ||||||||||||  | | |||||||  || || |||||||||||||| ||| || ||||||    
T  25084697 gtgcgtattgagaaaaataataatgaccgtcgatgagtatatttgaacggtccgttttcatttt-aatgcgtctgtgcggatcagcgcttcctacctttg 25084599  T
Q  391 cgttagtttttg 402  Q
     | |||||||||    
T  25084598 tgctagtttttg 25084587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 24982003 - 24981681
Alignment:
Q  8 gttatcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcga---gaaaatttgag 104  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||   |   ||||||| |||    
T  24982003 gttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccacgccctgacattttcaaaagatgaaaattcgag 24981904  T
Q  105 aaaacaaagagaaaatttgggaaattagggtttgaatttgaattgt-tgtggg-aaagagagaagcggatctgagtatttattaatggtaattggtagcg 202  Q
    |||| ||| | ||||||||||||||||| |    ||||||||||||  ||||| ||| |||||||||||||||||||||||| |||||||     ||||     
T  24981903 aaaagaaatataaaatttgggaaattagag---aaatttgaattgtgagtgggaaaaaagagaagcggatctgagtatttatgaatggtagcgactagc- 24981808  T
Q  203 agagcgggaggaagaagaggg-aactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgta-ttg 300  Q
     |||||||  ||| ||||||| |||| |||||||||||||  |||| |||||||||||| |  ||||||||| | || |||||||||||| | ||| |||    
T  24981807 -gagcgggttgaataagagggaaactgaattttgtgttttgatctgagtcgttggatttcatcttatcgacgatctatattagcgatccgcgtgtagttg 24981709  T
Q  301 agaaaatgaatagtgaacgtcgataagt 328  Q
       ||| ||||| |||||||||||||||    
T  24981708 cataaaagaatactgaacgtcgataagt 24981681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 31825804 - 31826122
Alignment:
Q  30 tgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcgaga---aaatttgagaaaacaaagaga------aaat 120  Q
    ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||  ||||   ||||| ||||||  ||  |||      ||||    
T  31825804 tgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattggagaaacgaagaagatttgagaaat 31825903  T
Q  121 ttgggaaattagggtttgaatttgaattgttgtgggaaagagagaagcggatctgagtatttattaatggtaattggtagc--gagagcgggaggaagaa 218  Q
    ||||||||||||||||||  ||||||| |  |||||||||||||||| |||||||||||||||| |||||    ||| |||  |||||||||| ||| ||    
T  31825904 ttgggaaattagggtttggttttgaatcggagtgggaaagagagaaggggatctgagtatttatgaatgg---gtgggagcgtgagagcgggatgaataa 31826000  T
Q  219 gagggaactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgtattg-agaaaatgaatagtgaa 317  Q
    ||||||||| |||||||||||||  |||  |||||||||||| | || || |||||| |||  | |||||||||||||||||  ||||  ||||  ||||    
T  31826001 gagggaactgaattttgtgttttgatctcagtcgttggatttgatgtaatagacggtgtaagattgcgatccgtgcgtattgcggaaagcgaatgatgaa 31826100  T
Q  318 cgtcgataagtttatttgaacg 339  Q
    ||| ||||||| ||||||||||    
T  31826101 cgttgataagtgtatttgaacg 31826122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 24497488 - 24497602
Alignment:
Q  12 tcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcgagaaaatttgagaaaac-a 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||| |    
T  24497488 tcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttccacgccctgacattttcaagagaaaatttgagaaaacga 24497587  T
Q  111 aagagaaaatttggg 125  Q
    || ||||||||||||    
T  24497588 aatagaaaatttggg 24497602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 24920111 - 24920438
Alignment:
Q  8 gttatcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcgagaaaatttgagaaa 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||||||||||||||||||||||       
T  24920111 gttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatttgag--- 24920207  T
Q  108 acaaagagaaaatttgggaaattagggtttgaatttgaattgttgtgggaaagagagaagcggatctgagtatttattaatggtaattggtagcgagagc 207  Q
             ||||| |||   || | ||||||| ||||||   |||| ||||||   ||| ||||||||||||||||  ||||||||||| |||||| |     
T  24920208 ---------aaattaggg---tttgagtttgaaattgaatgtgtgtgagaaagatgaaaggggatctgagtatttatgtatggtaattggaagcgagcgg 24920295  T
Q  208 g----ggaggaagaaga----gggaactcaattttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgta-t 298  Q
    |    ||| ||||||||    || |||| ||||||||||||||||||| |||||||||||| || ||||||||||| || |||||||||||| | ||| |    
T  24920296 gatgaggatgaagaagaagagggaaactgaattttgtgttttcttctgtgtcgttggatttcaacttatcgacggtctatattagcgatccgcgtgtagt 24920395  T
Q  299 tgagaaaatgaatagtgaacgtcgataagtttatttgaacggt 341  Q
    | |  |||  |||| ||||||| ||||||| ||||||||||||    
T  24920396 tcaccaaaacaatactgaacgttgataagtatatttgaacggt 24920438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 21584822 - 21584921
Alignment:
Q  8 gttatcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcgagaaaatttgagaaa 107  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  21584822 gttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaatttgagaaa 21584921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 21585021 - 21585119
Alignment:
Q  231 ttttgtgttttcttctgcgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgtattgagaaaatgaatagtgaacgtcgataagtt 329  Q
    |||||||||||  | || |||||||||||||| || |||||||||||||||| ||||||||||||||||| || || ||||  || |||| ||||||||    
T  21585021 ttttgtgttttgatatgggtcgttggattttacgtaatcgacggtttaaattggcgatccgtgcgtattgtgataaggaatgatggacgttgataagtt 21585119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 24497734 - 24497812
Alignment:
Q  248 cgtcgttggattttaagttatcgacggtttaaattagcgatccgtgcgtattgagaaaatgaatagtgaacgtcgataa 326  Q
    ||||||||||||| || ||||||||||||||||    ||||||||||||||||   |||||||||||||||||||||||    
T  24497734 cgtcgttggatttgaaattatcgacggtttaaacactcgatccgtgcgtattgcccaaatgaatagtgaacgtcgataa 24497812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 14261261 - 14261338
Alignment:
Q  12 tcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttc 89  Q
    |||||||| || || | ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  14261261 tcacgaagcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacattttc 14261338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 10575340 - 10575217
Alignment:
Q  12 tcacgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacattttcgcgagaaaatttgagaaaacaa 111  Q
    ||||| |||||||| | ||| ||||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||| |   ||||||||||||||   |    
T  10575340 tcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacatttttgaatgaaaatttgagaaattga 10575241  T
Q  112 agagaaaatttgggaaattagggtttga 139  Q
    ||    ||||||||||||||||||||||    
T  10575240 ag----aatttgggaaattagggtttga 10575217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 39955077 - 39955150
Alignment:
Q  15 cgaagaaccttcctatgcctctttgcacctccctttcctagtcccttacccccctttccacgacctgacatttt 88  Q
    ||||||||||| || ||||||||||| ||||||||||| | |||||| || || ||||||||||||||||||||    
T  39955077 cgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 39955150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 52794390 - 52794301
Alignment:
Q  115 gaaaatttgggaaattagggtttgaatttgaattgttgtg-ggaaagagagaagcggatctgagtatttattaatggtaattggtagcga 203  Q
    ||||||||| |||||||||||||||||||||||    ||| | |||||   ||| |||||||| |||||||  |||||||||||||||||    
T  52794390 gaaaatttgagaaattagggtttgaatttgaatatgagtgagaaaagatgaaaggggatctgactatttatgtatggtaattggtagcga 52794301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 9671494 - 9671462
Alignment:
Q  115 gaaaatttgggaaattagggtttgaatttgaat 147  Q
    ||||||||| |||||||||||||||||||||||    
T  9671494 gaaaatttgagaaattagggtttgaatttgaat 9671462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 13374447 - 13374415
Alignment:
Q  115 gaaaatttgggaaattagggtttgaatttgaat 147  Q
    ||||||||| |||||||||||||||||||||||    
T  13374447 gaaaatttgagaaattagggtttgaatttgaat 13374415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 35785792 - 35785760
Alignment:
Q  115 gaaaatttgggaaattagggtttgaatttgaat 147  Q
    ||||||||| |||||||||||||||||||||||    
T  35785792 gaaaatttgagaaattagggtttgaatttgaat 35785760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 42929863 - 42929895
Alignment:
Q  115 gaaaatttgggaaattagggtttgaatttgaat 147  Q
    ||||||||| |||||||||||||||||||||||    
T  42929863 gaaaatttgagaaattagggtttgaatttgaat 42929895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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