View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4475_high_11 (Length: 238)
Name: NF4475_high_11
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44235060 - 44235282
Alignment:
| Q |
1 |
tttgtcgttttctgttgaaagttcaaccattgattggaatatgggttcatcagaatcctgagctagggaacgttgtatatgtgatgcctggttttgtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44235060 |
tttgtcgttttctgttgaaagttcaaccattgattggaatatgggttcatcagaatcctgagctagggaacgttgtatatgtgatgcctggttttgtttc |
44235159 |
T |
|
| Q |
101 |
tgttgttggttgtagggtcattccacaggagcttggtcctttgggtatggaagatggtccaattctatgggcctctgtttttgaagttattgctgatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44235160 |
tgttgttggttgtagggtcattccacaggagcttggtcctttgggtatggaagatggtccaattctatgggcctctgtttttgaagttattgctgatttt |
44235259 |
T |
|
| Q |
201 |
gatggttcacctatgtttttcct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44235260 |
gatggttcacctatgtttttcct |
44235282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 39377210 - 39377315
Alignment:
| Q |
1 |
tttgtcgttttctgttgaaagttcaaccattgattggaatatgggttcatcagaatcctgagctagggaacgttgtatatgtgatgcctggttttgtttc |
100 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| |||| ||||||||||| ||||||||||| || || || |||| ||||| ||||| ||||||||||| |
|
|
| T |
39377210 |
tttgtcgttttcttttgagtgttaaaccattgcttggtatatgggttcaacagaatcctgaacttggtaatcttgtttatgtaatgccaggttttgtttc |
39377309 |
T |
|
| Q |
101 |
tgttgt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
39377310 |
tgttgt |
39377315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 39394510 - 39394615
Alignment:
| Q |
1 |
tttgtcgttttctgttgaaagttcaaccattgattggaatatgggttcatcagaatcctgagctagggaacgttgtatatgtgatgcctggttttgtttc |
100 |
Q |
| |
|
||||||||||||| |||| ||| | ||||| |||| ||||||||||| ||||||||||| || || || |||| ||||| ||||| ||||||||||| |
|
|
| T |
39394510 |
tttgtcgttttcttttgagtgttaagtcattgcttggtatatgggttcaacagaatcctgaacttggtaatcttgtttatgtaatgccaggttttgtttc |
39394609 |
T |
|
| Q |
101 |
tgttgt |
106 |
Q |
| |
|
| |||| |
|
|
| T |
39394610 |
tattgt |
39394615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University