View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475_high_13 (Length: 232)
Name: NF4475_high_13
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 27772272 - 27772059
Alignment:
| Q |
1 |
cgacatcaaatttttatatttctatgtcacgttgcgaataagtcacatcgtctgtatataacttcgattctctgcaatatcaagaatcgcaactcgattg |
100 |
Q |
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| T |
27772272 |
cgacatcaaatttttacatttctatgtcgtgtcgcgactaagtcacatcgtctgtatataacttcgattctctgcaatatcaagaatcacaactcgattg |
27772173 |
T |
|
| Q |
101 |
tagttttaaatcttggtgttgagtgtctccatgtcgcgtcccgattatccaacaacatggattccttatataaacagcaaagattgttctcaaggatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27772172 |
tagttttaaatcttggtgttgagtgtctccatgtcgcgtcccgattatccaacaacatggattccttatataaacagcaaagattgttctcaaggatttt |
27772073 |
T |
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| Q |
201 |
gtagcatgtattgt |
214 |
Q |
| |
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||||| |||||||| |
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| T |
27772072 |
gtagcgtgtattgt |
27772059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 12618326 - 12618274
Alignment:
| Q |
162 |
ttccttatataaacagcaaagattgttctcaaggattttgtagcatgtattgt |
214 |
Q |
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|||| ||||| || |||||||||||||||||||| ||||||||| | |||||| |
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| T |
12618326 |
ttccatatatgaatagcaaagattgttctcaaggtttttgtagcgtctattgt |
12618274 |
T |
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