View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475_high_3 (Length: 345)
Name: NF4475_high_3
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 32604926 - 32605236
Alignment:
| Q |
19 |
tatataggccaaaaaagctaattatttaaaaaagagaagccccagtttcacacaccaccggcacttaattaatggcactaactctctcacctcaattttt |
118 |
Q |
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| T |
32604926 |
tatataggccaaaaaagctaattatttaaaaaagagaagccccagtttcacacaacaccggcacttaattaatggcactaactctctcacctcaattttt |
32605025 |
T |
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| Q |
119 |
catcttagagattcccttatccattttccaaaacgagcccatattccgatcaattactagaatctgattttatgtttattatggaatcaatgttttttcc |
218 |
Q |
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| T |
32605026 |
caccttagagattcccttatccattttccaaaacaagcccatattccgatcaattactagaatctgattttatgtttattatggaatcaatgttttttcc |
32605125 |
T |
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| Q |
219 |
tacacaatattgattcaccatgttttgaaagtctaaccccttccgtcttacccggtctttgtttgtgttatggaatggatttaaacccaatcaactacgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
32605126 |
tacacaatattgattcaccatgttttgaaagtctaaccccttccgctttacccaatctttgtttgtgttttggaatggatttaaacccaatcaactacag |
32605225 |
T |
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| Q |
319 |
attagatcaca |
329 |
Q |
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||||||||||| |
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| T |
32605226 |
attagatcaca |
32605236 |
T |
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