View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4475_high_5 (Length: 297)
Name: NF4475_high_5
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 14825202 - 14825328
Alignment:
| Q |
110 |
gatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagttctnnnnnnnnctagtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
14825202 |
gatctagacagacaatttatgtatagtgaatgaattttttagtaattattgaatcaaagacaaacacaacaacaattacaggttctaaaaaaaactagtt |
14825301 |
T |
|
| Q |
210 |
tatcgataatggaggagggaaaaattt |
236 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14825302 |
tatcgataatggaggagggaaaaattt |
14825328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 12072452 - 12072362
Alignment:
| Q |
104 |
ttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagttct |
195 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
12072452 |
ttttcggatctagacagacagtttatgtatagtgaatttattttt-agtaataattgaaccaaacacaaacacaacaacaattacaaattct |
12072362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 3190156 - 3190094
Alignment:
| Q |
133 |
tagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagttct |
195 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
3190156 |
tagtgaacaaattttttagtaataattgaatcagagataaacacaacaacaattacaagttct |
3190094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 3207079 - 3207017
Alignment:
| Q |
133 |
tagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagttct |
195 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
3207079 |
tagtgaacaaattttttagtaataattgaatcagagataaacacaacaacaattacaagttct |
3207017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 26887613 - 26887744
Alignment:
| Q |
104 |
ttttcagatctagacagacaatttatgtatagtgaatgaattttttagtaataattgaatcaaagacaaacacaacaacaattacaagttctnnnnnnnn |
203 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26887613 |
ttttcggatctagacagacaatttatgtatagtgaataaattttttaataataattgaatcagagacaaacacaacaacaattacaagttctaaaaaaca |
26887712 |
T |
|
| Q |
204 |
ctagtttatcgataatggaggagggaaaaatt |
235 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||| |
|
|
| T |
26887713 |
ccagtttattgattatggaggagggaaaaatt |
26887744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 147848 - 147797
Alignment:
| Q |
144 |
ttttttagtaataattgaatcaaagacaaacacaacaacaattacaagttct |
195 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
147848 |
ttttttagcaataattgaatcagagataaacacaacaacaattacaagttct |
147797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 22252803 - 22252757
Alignment:
| Q |
141 |
gaattttttagtaataattgaatcaaagacaaacacaacaacaatta |
187 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22252803 |
gaattttctagtaataattgaatcagagacaaacacaacaacaatta |
22252757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University