View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475_high_6 (Length: 292)
Name: NF4475_high_6
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 42974168 - 42973904
Alignment:
| Q |
19 |
ccttcagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgtgtacttcaatcgtccagaagttcagaaggcacttcatgccaat |
118 |
Q |
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| T |
42974168 |
ccttcagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgtgtacttcaatcgtccagaagttcagaaggcacttcatgccaat |
42974069 |
T |
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| Q |
119 |
gtaactgggatttcatatgcttggaaggcatgcaggtattttaatttaataaattgatatttagcatgatttgaagtctataattctatcatgattttga |
218 |
Q |
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| T |
42974068 |
gtaactgggatttcatatgcttggaaggcatgcaggtattttaatttaataaattgaaatttaacatgatttgaagtctataattctatcatgattttga |
42973969 |
T |
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| Q |
219 |
attggaaggttttttcttcttcttgacagtggtactgtttgggattactggactgattccccattg |
284 |
Q |
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| T |
42973968 |
attggaaggtttttt-ttcttcttgacagtggtactgtttgggattactggactgattccccattg |
42973904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 42980608 - 42980474
Alignment:
| Q |
23 |
cagccttggatgtatagagcatatgatccttgtgctgaaaggtattctgatgtgtacttcaatcgtccagaagttcagaaggcacttcatgccaatgtaa |
122 |
Q |
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| T |
42980608 |
cagccatggatgtctagagcatatgatccgtgtaccgaaaggcattctgatgtgtatttcaatcgtccagaagtgcagaaggcgcttcatgccaatgtta |
42980509 |
T |
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| Q |
123 |
ctgggatttcatatgcttggaaggcatgcaggtat |
157 |
Q |
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| T |
42980508 |
cagggattccatatatttggaagacatgcaggtat |
42980474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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