View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4475_high_7 (Length: 287)
Name: NF4475_high_7
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 2451111 - 2450853
Alignment:
| Q |
19 |
ctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcatatgccccatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2451111 |
ctcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcatatgctccatat |
2451012 |
T |
|
| Q |
119 |
gcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatcac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2451011 |
gcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagactttatatcac |
2450912 |
T |
|
| Q |
219 |
taccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2450911 |
taccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
2450853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 2440388 - 2440128
Alignment:
| Q |
20 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| |||| |||| |
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|
| T |
2440388 |
tcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctccat |
2440289 |
T |
|
| Q |
117 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatc |
216 |
Q |
| |
|
|| ||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| | ||||||||||| |||||| || |
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|
| T |
2440288 |
atacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattataagtttttatgtc |
2440189 |
T |
|
| Q |
217 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
2440188 |
tctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
2440128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 2568936 - 2569196
Alignment:
| Q |
20 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccat |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||| | ||| |||||||| |||||||||||||||||||||| | || |||| |
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|
| T |
2568936 |
tcataaccatcttttaagcttgatataaaatcatgagcacttgcagcctttgatgcctctataatttcactctcatcaaccttatcatcgtaagctccat |
2569035 |
T |
|
| Q |
117 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatc |
216 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||| || | ||||||||||||||||||||| | ||||| || |
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|
| T |
2569036 |
atgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgttcccttaatgaccttagattatatgtctttatgtc |
2569135 |
T |
|
| Q |
217 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| ||||| ||||| ||||||||| |
|
|
| T |
2569136 |
tctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcctatg |
2569196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 2623878 - 2623618
Alignment:
| Q |
20 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatca---tatgccccat |
116 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||||||||||||||||||||| | ||| |||||||| |||||||||||||||| |||| |||| |||| |
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|
| T |
2623878 |
tcatatccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactctcatcaacctgatcaccatatgatccat |
2623779 |
T |
|
| Q |
117 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatc |
216 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||| |||||| || |
|
|
| T |
2623778 |
atgcaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtttccttaatgaccttagattataagtttttatgtc |
2623679 |
T |
|
| Q |
217 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
|| |||||||| ||||||||||||| | ||||||||| || |||||||||||||||||| |
|
|
| T |
2623678 |
tctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcctatg |
2623618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 2641151 - 2641411
Alignment:
| Q |
20 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccat |
116 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||||||||||||||| | ||| | |||||||||||||||||||| ||||||| | || || | |
|
|
| T |
2641151 |
tcataaccatcttgtaagcttgatatgaaatcatgagcatttgcagcctttgatgcctgaataatctcactctcatcaactttatcatcataggctccgt |
2641250 |
T |
|
| Q |
117 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatc |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||| |||||||| ||||||| ||| || |||||||| ||||||||||||||||| |||||||| |
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|
| T |
2641251 |
atgcaatattttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatgtgtttccttaacgaccttagattataagactttatatc |
2641350 |
T |
|
| Q |
217 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
2641351 |
ttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcctatg |
2641411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 2596495 - 2596754
Alignment:
| Q |
20 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
2596495 |
tcataaccatcttttaagcttgatatgaaatcgtgagcatttgcagcctttgatgcctctataatctcactctcatcaactttatcatcatatgctccat |
2596594 |
T |
|
| Q |
117 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatc |
216 |
Q |
| |
|
|| ||||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| | ||||||||| | ||||| || |
|
|
| T |
2596595 |
atacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattatatgtctttatgtc |
2596694 |
T |
|
| Q |
217 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctat |
276 |
Q |
| |
|
||||| ||||| |||||||||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
2596695 |
tctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctat |
2596754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 2592334 - 2592074
Alignment:
| Q |
20 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||| |||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
2592334 |
tcataaccatcttttaagcttgatatgaaatcatgagcatttgcagcctttgatgcctctataatttcactttcatcaaccttatcatcatatgatccat |
2592235 |
T |
|
| Q |
117 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatc |
216 |
Q |
| |
|
|||||||||| || | |||||||||| |||||||||||| |||||||||||||||| ||| || ||||||| |||||||||||||||| |||||| || |
|
|
| T |
2592234 |
atgcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtttccttagtgaccttagattataaatttttatgtc |
2592135 |
T |
|
| Q |
217 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||| || |||||||||||||||||| |
|
|
| T |
2592134 |
cctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatg |
2592074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 2672311 - 2672571
Alignment:
| Q |
20 |
tcataaccatattttaagcttgatataaaatcatgagcatttgcagccttagctgcatctataatctcactctcatcaaccttatcat---atgccccat |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||| |||||| | || |||| |
|
|
| T |
2672311 |
tcataaccatcttttaagcttgatataaaatcatgagcatttgaagcctttgatgcctctataatctcactctcatcaaccgtatcatcataagctccat |
2672410 |
T |
|
| Q |
117 |
atgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagattttatatc |
216 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||| | ||| || ||||| |||||||| |||||||| | ||||| || |
|
|
| T |
2672411 |
atgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagattatatgtctttatgtc |
2672510 |
T |
|
| Q |
217 |
actaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
||||| ||||| |||||||||||||| | ||| ||||| ||||||||||||||||||||| |
|
|
| T |
2672511 |
tctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
2672571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 277
Target Start/End: Original strand, 17870446 - 17870610
Alignment:
| Q |
113 |
ccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagatttta |
212 |
Q |
| |
|
||||||||||| || || |||||||| ||| | ||||||||| ||||| |||||||||| || || || |||| |||| |||| ||||| ||||||| |
|
|
| T |
17870446 |
ccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttta |
17870545 |
T |
|
| Q |
213 |
tatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
277 |
Q |
| |
|
| | ||||||| || ||||| | ||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
17870546 |
tgtttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatg |
17870610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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