View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475_low_10 (Length: 266)
Name: NF4475_low_10
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 23430468 - 23430316
Alignment:
| Q |
15 |
agtaataataagctttattgtagaagaaaaatggatttaattaatgtatgattctcgctttatatatagatgaaaaatgaatgcc--aaccaggattgtc |
112 |
Q |
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| T |
23430468 |
agtaataataagctttattgtagaagaaaa-tggatttaattaatgtatgattctcgttttatatatagatgaaaaatgaatgccccaaccaggattgtc |
23430370 |
T |
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| Q |
113 |
tggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
166 |
Q |
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| T |
23430369 |
tggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
23430316 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 23438525 - 23438369
Alignment:
| Q |
15 |
agtaataataagctttattgtagaagaaaaatggat----ttaattaatgtatgattctcgctttatatatagatgaaaaatgaat----gccaaccagg |
106 |
Q |
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||||| ||||||||||||| | |||||||||||||| |||| ||||| | ||||| |||||||||||||| ||||||||||| |||||||| | |
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| T |
23438525 |
agtaaaaataagctttattattgaagaaaaatggatgtgagtaatgaatgtctaattcttgctttatatatagaagaaaaatgaatggacgccaaccatg |
23438426 |
T |
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| Q |
107 |
attgtctggtgtcaaagtttgttaggagattaactcacacctataaaattagaggtcaac |
166 |
Q |
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||| |||| |||||||||||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
23438425 |
attctctgctgtcaaagtttgtt---agattaactcacatctataaaattagaagtcaac |
23438369 |
T |
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