View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4475_low_13 (Length: 241)
Name: NF4475_low_13
Description: NF4475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4475_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 43478557 - 43478436
Alignment:
| Q |
104 |
attggccttcaagatacacaacctatgttattattgcatcatagaattttggcctttaaaataatagacaatacatatgtaatataaaaacaataacatg |
203 |
Q |
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| T |
43478557 |
attggctttcaagatacacaacctatgttattattgcatcatagaattttggcctttaaaataatagacaatacatatgcaatataaaaacaataacatg |
43478458 |
T |
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| Q |
204 |
ctgtgagaaagttctagttcat |
225 |
Q |
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| T |
43478457 |
ctgtgagaaagttctagttcat |
43478436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 43478596 - 43478555
Alignment:
| Q |
5 |
gtatcaatttattagtatattatagccaataactacacgatt |
46 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43478596 |
gtatcaatttattagtatattatagccaataactacacgatt |
43478555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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