View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476-Insertion-4 (Length: 674)
Name: NF4476-Insertion-4
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 528 - 641
Target Start/End: Complemental strand, 36324260 - 36324149
Alignment:
| Q |
528 |
tttcctgttttgtgacaacactttcttttagagattaatttgtcttgaaatattacgcccttttcacaactttaattaggatcttttggtacttattatt |
627 |
Q |
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| T |
36324260 |
tttcctgttttgttacaacactttcttttagagattaatttgtcttgaaatattacg-ccttttcacaactttaattaggatctttt-gtacttattatt |
36324163 |
T |
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| Q |
628 |
gaaaataaagaatg |
641 |
Q |
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| T |
36324162 |
gaaaataaagaatg |
36324149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 640
Target Start/End: Complemental strand, 36306660 - 36306556
Alignment:
| Q |
530 |
tcctgttttgtgacaacactttcttttagagattaatttgtcttgaaatattacgcccttttcacaactttaattaggatcttttggtacttattattga |
629 |
Q |
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| T |
36306660 |
tcctgtttggttccaacactttctttcagaggttaacttgtctagtaaaattac-cccttttcacaacttta----gggtcttttg-tacttattattga |
36306567 |
T |
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| Q |
630 |
aaataaagaat |
640 |
Q |
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| T |
36306566 |
aaataaagaat |
36306556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 33052138 - 33052034
Alignment:
| Q |
13 |
gtggtgcattttctttcaacaatcttctcttttttgggggaacatttgacaaccatctttatgctcagtatattatgaattgaattgtttgttttaggaa |
112 |
Q |
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| T |
33052138 |
gtggtgcattttcattcaacaatcatctattttt-gggtgaacatttaacaaccatctttattcttagtat-ttatgaattgaattgtttgttttaggta |
33052041 |
T |
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| Q |
113 |
cattttt |
119 |
Q |
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| T |
33052040 |
cattttt |
33052034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 489
Target Start/End: Complemental strand, 33051836 - 33051759
Alignment:
| Q |
414 |
ctaaaatatgaagaggttaatattccaatgtaaag--tttataattttacctgctatataataatgcatttatgttat |
489 |
Q |
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| T |
33051836 |
ctaaaatatgaagaggctaatatgtcaatgtataacatttgtaattttacctaatatataataatgcatttattttat |
33051759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 3653096 - 3653200
Alignment:
| Q |
13 |
gtggtgcattttctttcaacaatcttctcttttttgggggaacatttgacaaccatctttatgctcagtatattatgaattgaattgtttgttttaggaa |
112 |
Q |
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| T |
3653096 |
gtggtgcattttcattcaacaatcgtctattttt-gggtgaacatttaacaaccatctttattcttagtat-ttatagattgaattgtttgttttagata |
3653193 |
T |
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| Q |
113 |
cattttt |
119 |
Q |
| |
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||||||| |
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| T |
3653194 |
cattttt |
3653200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 508
Target Start/End: Original strand, 3653428 - 3653520
Alignment:
| Q |
416 |
aaaatatgaagaggttaatattccaatgtaaagtttataattttacctgctatataataatgcatttatgttatgtgtttatatctatatgac |
508 |
Q |
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|||||||||||||| |||||| ||||||||| ||| ||||||||||| ||||||||||||||||||| ||||| |||| || |||||||| |
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| T |
3653428 |
aaaatatgaagaggctaatatgccaatgtaacatttgtaattttacctaatatataataatgcatttattttatgattttagatgtatatgac |
3653520 |
T |
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