View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476-Insertion-5 (Length: 382)
Name: NF4476-Insertion-5
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 39484214 - 39484317
Alignment:
| Q |
67 |
acatatccaacaaacaactgaagaaaaaatgtaattaaagtttcaacaattgacatcgacatatcacaaacaacacacatagcttcaaattattataaat |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39484214 |
acatatccaacaaacaactgaagaaaaaatgtaattaaagtttcaacaattgacatcgacatatcacaaacaacacacatagcttcaaattattataaat |
39484313 |
T |
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| Q |
167 |
cact |
170 |
Q |
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|||| |
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| T |
39484314 |
cact |
39484317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 39484452 - 39484529
Alignment:
| Q |
305 |
cgctgaccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttg |
382 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39484452 |
cgctggccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttg |
39484529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 38955121 - 38955191
Alignment:
| Q |
311 |
ccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagcttt |
381 |
Q |
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||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||| |
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| T |
38955121 |
ccttctttacccatcctcctcctagcctgcgtttatacacaacacttcaacccaccaccaccatcaacttt |
38955191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 22964796 - 22964726
Alignment:
| Q |
311 |
ccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagcttt |
381 |
Q |
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||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
22964796 |
ccttctttacccaccctcctcctagcctgcgtttctacacaacacttcaacccaccaccaccatcaacttt |
22964726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 38442253 - 38442317
Alignment:
| Q |
306 |
gctgaccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccacca |
370 |
Q |
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|||| |||| ||||||||||||||||||| | |||| |||| ||| |||||||||||||||||| |
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| T |
38442253 |
gctggccttttttacctatcctcctcctaccctgcgcttctgcacaccacttcaacccaccacca |
38442317 |
T |
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