View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476-Insertion-7 (Length: 218)
Name: NF4476-Insertion-7
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 43180207 - 43180418
Alignment:
| Q |
7 |
acaaacattattatttcttgttgcaatggcatcatttaaagctcatctttcggaagtgaactttttgttgggtttttagatgactttttgattggatagg |
106 |
Q |
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| T |
43180207 |
acaaacattattatttcttgttgcaatggcatcatttaaagctcatctttcggaagtgaactttttgttgggtttttagatgactttttgattggatagg |
43180306 |
T |
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| Q |
107 |
aagcctccatagctatgccacatagaccttgcttatgagatatggccctttgcattctaatgtaaccctgttctccccattcacttccccaagagttctt |
206 |
Q |
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| T |
43180307 |
aagcctccatagctatgccacatagaccttgcttatgagatatggccctttgcattctaatgtaaccctgttctccccattcacttccccaagagttctt |
43180406 |
T |
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| Q |
207 |
cactgtccaata |
218 |
Q |
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|||||||||||| |
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| T |
43180407 |
cactgtccaata |
43180418 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 34311347 - 34311462
Alignment:
| Q |
103 |
taggaagcctccatagctatgccacatagaccttgcttatgagatatggccctttgcattctaatgtaaccctgttctccccattcacttccccaagagt |
202 |
Q |
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|||||||| ||||||||||||||||| || |||| ||| | ||||| ||||| |||||| |||||||| ||||| |||||||| |||||| |||| |
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| T |
34311347 |
taggaagcttccatagctatgccacaaagtccttccttgttagatacattccttttcattcttatgtaaccttgttcaccccattccgctccccatgagt |
34311446 |
T |
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| Q |
203 |
tcttcactgtccaata |
218 |
Q |
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| T |
34311447 |
tcctcacaatccaata |
34311462 |
T |
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