View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476_high_2 (Length: 431)
Name: NF4476_high_2
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 56 - 393
Target Start/End: Original strand, 34786724 - 34787068
Alignment:
| Q |
56 |
ttgaaccagaatacttcactataaaacgtttctcagaagaaaaccggaaggcgttgcacgagtttttcggataacaacctaaagtctttgttgaaaagga |
155 |
Q |
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| T |
34786724 |
ttgaaccagaatacttcactataaaacgtttctcagaagaaaaccggaaggcgttgcacgagtttttcggataacaacctaaagtctttgttgaaaagga |
34786823 |
T |
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| Q |
156 |
ttccgggaacaagattcaataacatgattcaatcaaggattcaattaaggattctggtaacccactaaccaagaaaacctaacc-------aacctcaat |
248 |
Q |
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| T |
34786824 |
ttccgggaacaagattccataacatgattcaatcaaggattcaattaaggattctggtaacccactaaccaagaaaacctaaccaacctcaaacctcaat |
34786923 |
T |
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| Q |
249 |
caatgacttgagtaaacaattaaaacacaaacacgtgaaaatattaagagaaataacacaaaaactattaagagaacaccgagaatttgttgaaagctga |
348 |
Q |
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| T |
34786924 |
caatgatttgagtaaacaattaaaacacaaacacgtgaaaatattaagagaaataacacaaaaactattaagagaacaccgagaatttgttgaaagctga |
34787023 |
T |
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| Q |
349 |
agtgcgaattgnnnnnnnnccagaaagaggggtgaatgccacttg |
393 |
Q |
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| T |
34787024 |
agtgcgaattgttttttttccagaaagaggggtgaatgccacttg |
34787068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 24128201 - 24128153
Alignment:
| Q |
279 |
acacgtgaaaatattaagagaaataacacaaaaactattaagagaacac |
327 |
Q |
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| T |
24128201 |
acacatgaaaatattaagaggaataacacaaaaacgattaagagaacac |
24128153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 24128340 - 24128285
Alignment:
| Q |
97 |
aaccggaaggcgttgcacgagtttttcggataacaacctaaagtctttgttgaaaa |
152 |
Q |
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| T |
24128340 |
aaccggaaggcattgcacgagttttccggataacaaccggaaggctttggtgaaaa |
24128285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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