View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476_high_6 (Length: 337)
Name: NF4476_high_6
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 4170934 - 4171259
Alignment:
| Q |
6 |
agaaatattataaatttccctaataactttgtgataaatgagttacagactcaattaaattttcaaatgatctttaataacttcatctggaaagtgttta |
105 |
Q |
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| T |
4170934 |
agaaatattataaatttccctaataactttgtgataaatgagttacggactcaattaaattttcaaatgatctttaataacttcatctggaaagtgctta |
4171033 |
T |
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| Q |
106 |
tctcatagtttcagatttcagaaaaagtactaaatttgcaattgattatatacatgtctgtcaaagatttgtcaagtcaatggtaagagtttaacttcgt |
205 |
Q |
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| T |
4171034 |
actcatagtttcagatttcagaaaaagtactaaatttgcaattgattataaacatgtctttcaaagatttgtcaagtcaatggtaagagtttaacttcat |
4171133 |
T |
|
| Q |
206 |
aatctcaaggagtagagtttgaa--tcacgtgaaacaaatgtgaacgggtattgctgcttatagcgaaaaatagtctcacgaataactcacgagtccata |
303 |
Q |
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| T |
4171134 |
aatctcaaggagtagagtttgaatctcacgtgaaacaaatgtgaacggatattgttgcttatagcgaaaaatagtctcacgaataattcacgagtccata |
4171233 |
T |
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| Q |
304 |
tttaataaaagtcttttcagaattat |
329 |
Q |
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| T |
4171234 |
tttaataaaagtcttttcagaattat |
4171259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 4160886 - 4160805
Alignment:
| Q |
14 |
tataaatttccctaataactttgtgataaatgagttacagactc----aattaaattttcaaatgatctttaataacttcat |
91 |
Q |
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||||||||||| |||||||||| || || ||| |||||||||| || ||||||||||||| |||||| |||||||||| |
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| T |
4160886 |
tataaatttccttaataactttatgtgaattgaattacagactcaaataaataaattttcaaattatctttcataacttcat |
4160805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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