View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4476_low_1 (Length: 577)

Name: NF4476_low_1
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4476_low_1
NF4476_low_1
[»] chr7 (2 HSPs)
chr7 (1-577)||(28266396-28266974)
chr7 (451-504)||(18750871-18750924)
[»] chr6 (2 HSPs)
chr6 (452-517)||(34625716-34625781)
chr6 (452-499)||(34598538-34598585)
[»] chr4 (2 HSPs)
chr4 (452-507)||(12709995-12710050)
chr4 (466-507)||(22440626-22440667)
[»] chr1 (3 HSPs)
chr1 (458-504)||(29230060-29230106)
chr1 (467-512)||(2646237-2646282)
chr1 (451-491)||(43609829-43609869)
[»] chr8 (1 HSPs)
chr8 (458-499)||(2517107-2517148)
[»] chr5 (1 HSPs)
chr5 (474-507)||(18542245-18542278)
[»] chr2 (1 HSPs)
chr2 (465-498)||(14268758-14268791)


Alignment Details
Target: chr7 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 28266974 - 28266396
Alignment:
Q  1 tgtgagaaattacttactgttttgagagatcccttcacatgtatgaatcttccctcagatgatatggacctggagataagcctcaaaatgcaaagctcaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28266974 tgtgagaaattacttactgttttaagagatcccttcacatgtatgaatcttccctcagatgatatggacctggagagaagcctcaaaatgcaaagctcaa 28266875  T
Q  101 agagtactgttttaccacttccggtcggagcagagatgaccatgtttacatcagagtggtaacaggtaggaaagcattcactctgaagtgaattaaaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266874 agagtactgttttaccacttccggtcggagcagagatgaccatgtttacatcagagtggtaacaggtaggaaagcattcactctgaagtgaattaaaata 28266775  T
Q  201 tctgtataccacacaacatagtgttaatcattatactaatgtaagaacctttgtgagatcactttaaatgcgtattcttttctaatccatgactatcaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266774 tctgtataccacacaacatagtgttaatcattatactaatgtaagaacctttgtgagatcactttaaatgcgtattcttttctaatccatgactatcaga 28266675  T
Q  301 tgtttgaaattgtactgaaaaatcacaaattattatgttatttcacaaagatacgtactaaatgagcaccattttctaatatggtctctgaagcacagac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266674 tgtttgaaattgtactgaaaaatcacaaattattatgttatttcacaaagatacgtactaaatgagcaccattttctaatatggtctctgaagcacagac 28266575  T
Q  401 acttatgatat--taggtgtgcccccgtgtccgacacgcatcggtaccaactcatgtgtttacatccaattaagttattttctcaaattattaccggtgt 498  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28266574 acttatgatattataggtgtgcccccgtgtccgacacgcatcggtaccaactcatgtgtttacatccaattaatttattttctcaaattattaccggtgt 28266475  T
Q  499 cgatgtatctatgtcatgtgtcaaagtcgtgtcaagggtccgtgtatgtgtcatgtcagtgcttcgtaaaatatgatac 577  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28266474 cgatgtatctatgtcatgtgtcaaagtcgtgtcaagggtccatgtctgtgtcatgtcagtgcttcgtaaaatatgatac 28266396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 18750924 - 18750871
Alignment:
Q  451 catgtgtttacatccaattaagttattttctcaaattattaccggtgtcgatgt 504  Q
    |||||| |||||| |||||| || ||||||| |||||||||||| |||||||||    
T  18750924 catgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgt 18750871  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 517
Target Start/End: Complemental strand, 34625781 - 34625716
Alignment:
Q  452 atgtgtttacatccaattaagttattttctcaaattattaccggtgtcgatgtatctatgtcatgt 517  Q
    ||||| |||||| ||||||| | ||||||||||||||||| ||||||||||||||| || ||||||    
T  34625781 atgtgattacattcaattaattcattttctcaaattattatcggtgtcgatgtatcaatttcatgt 34625716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 499
Target Start/End: Complemental strand, 34598585 - 34598538
Alignment:
Q  452 atgtgtttacatccaattaagttattttctcaaattattaccggtgtc 499  Q
    ||||| |||||||||||||| | ||||||||||||||||| |||||||    
T  34598585 atgtgattacatccaattaattcattttctcaaattattatcggtgtc 34598538  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 507
Target Start/End: Complemental strand, 12710050 - 12709995
Alignment:
Q  452 atgtgtttacatccaattaagttattttctcaaattattaccggtgtcgatgtatc 507  Q
    |||||||||| | ||||||| |||||||||||||||||||||| | |||| |||||    
T  12710050 atgtgtttacgttcaattaatttattttctcaaattattaccgatatcgacgtatc 12709995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 507
Target Start/End: Original strand, 22440626 - 22440667
Alignment:
Q  466 aattaagttattttctcaaattattaccggtgtcgatgtatc 507  Q
    ||||| || ||||||||||||||||| |||||||||||||||    
T  22440626 aattatgtgattttctcaaattattaacggtgtcgatgtatc 22440667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 29230106 - 29230060
Alignment:
Q  458 ttacatccaattaagttattttctcaaattattaccggtgtcgatgt 504  Q
    |||||| |||||| || ||||||||||||||||||||||||| ||||    
T  29230106 ttacattcaattatgtcattttctcaaattattaccggtgtcaatgt 29230060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 2646237 - 2646282
Alignment:
Q  467 attaagttattttctcaaattattaccggtgtcgatgtatctatgt 512  Q
    ||||||||||||||||||||||||| |||||| || || |||||||    
T  2646237 attaagttattttctcaaattattatcggtgttgacgtgtctatgt 2646282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 491
Target Start/End: Original strand, 43609829 - 43609869
Alignment:
Q  451 catgtgtttacatccaattaagttattttctcaaattatta 491  Q
    |||||| |||||| |||||| ||||||||||||||||||||    
T  43609829 catgtgattacattcaattatgttattttctcaaattatta 43609869  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 499
Target Start/End: Complemental strand, 2517148 - 2517107
Alignment:
Q  458 ttacatccaattaagttattttctcaaattattaccggtgtc 499  Q
    |||||| ||||||| | |||||||||||||||||||||||||    
T  2517148 ttacattcaattaattcattttctcaaattattaccggtgtc 2517107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 507
Target Start/End: Original strand, 18542245 - 18542278
Alignment:
Q  474 tattttctcaaattattaccggtgtcgatgtatc 507  Q
    ||||||||||||||||||| ||||||||||||||    
T  18542245 tattttctcaaattattactggtgtcgatgtatc 18542278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 498
Target Start/End: Original strand, 14268758 - 14268791
Alignment:
Q  465 caattaagttattttctcaaattattaccggtgt 498  Q
    ||||||||| ||||||||||||||||||||||||    
T  14268758 caattaagtcattttctcaaattattaccggtgt 14268791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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