View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4476_low_12 (Length: 284)

Name: NF4476_low_12
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4476_low_12
NF4476_low_12
[»] chr4 (4 HSPs)
chr4 (176-284)||(25226801-25226909)
chr4 (112-179)||(25226707-25226774)
chr4 (23-79)||(25226361-25226417)
chr4 (179-258)||(22178726-22178805)
[»] chr3 (2 HSPs)
chr3 (179-258)||(19588495-19588574)
chr3 (179-258)||(12283717-12283796)
[»] chr1 (6 HSPs)
chr1 (177-284)||(30757732-30757839)
chr1 (177-284)||(30765184-30765291)
chr1 (179-258)||(52776097-52776176)
chr1 (117-170)||(30757876-30757929)
chr1 (117-170)||(30765328-30765381)
chr1 (206-284)||(14506402-14506480)
[»] chr6 (2 HSPs)
chr6 (206-284)||(20700980-20701058)
chr6 (238-279)||(17118563-17118604)
[»] chr2 (1 HSPs)
chr2 (179-283)||(29497874-29497978)
[»] scaffold0329 (1 HSPs)
scaffold0329 (179-258)||(9426-9505)
[»] chr5 (1 HSPs)
chr5 (206-284)||(42134220-42134298)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 25226801 - 25226909
Alignment:
Q  176 catgcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttg 275  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25226801 catgcttgggaacgctgtaaccatttggtacactcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttg 25226900  T
Q  276 atgtttggg 284  Q
    |||||||||    
T  25226901 atgtttggg 25226909  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 25226707 - 25226774
Alignment:
Q  112 gagcggatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaaacttacatg 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25226707 gagcggatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaaacttacatg 25226774  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 25226361 - 25226417
Alignment:
Q  23 atgagagagttagttacgatccataattgtttctgtcattgatgcttgttcttcaag 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25226361 atgagagagttagttacgatccataattgtttctgtcattgatgcttgttcttcaag 25226417  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 22178805 - 22178726
Alignment:
Q  179 gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt 258  Q
    ||||||||||| ||||||||||||| ||| |||||| | || ||||| ||  |||||| ||||||||| ||||| |||||    
T  22178805 gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaactatcgtatt 22178726  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 19588574 - 19588495
Alignment:
Q  179 gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt 258  Q
    ||||||||||| ||||||||||||| ||| |||||| |||| ||||| ||| |||||| ||||||||| ||||| |||||    
T  19588574 gcttgggaacgatgcaaccatttggtacaatcttggcttattaattccgtttctgattcaattgctcaaactatcgtatt 19588495  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 12283717 - 12283796
Alignment:
Q  179 gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt 258  Q
    ||||||||||| ||||||||||||| ||| |||||| | || ||||| |||  ||||| ||||||||| ||||| |||||    
T  12283717 gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttttgattcaattgctcaaactatcgtatt 12283796  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 30757839 - 30757732
Alignment:
Q  177 atgcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttga 276  Q
    |||||| |||| | ||||| ||||||| | | ||||||||||| ||||||||| |||||| |||| |||| |||||| | ||||||||| | || |||||    
T  30757839 atgcttcggaaagatgcaatcatttggtatagtcttggattattaattctgtttctgattcaatttctcaaactatattgtttcatgataatgcttttga 30757740  T
Q  277 tgtttggg 284  Q
    | ||||||    
T  30757739 tttttggg 30757732  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 30765291 - 30765184
Alignment:
Q  177 atgcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttga 276  Q
    |||||| |||| | ||||| ||||||| | | ||||||||||| ||||||||| |||||| |||| |||| |||||| | ||||||||| | || |||||    
T  30765291 atgcttcggaaagatgcaatcatttggtatagtcttggattattaattctgtttctgattcaatttctcaaactatattgtttcatgataatgcttttga 30765192  T
Q  277 tgtttggg 284  Q
    | ||||||    
T  30765191 tttttggg 30765184  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 52776097 - 52776176
Alignment:
Q  179 gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt 258  Q
    ||||||||||| ||||||||||||| ||| |||||| | || ||||| ||| |||||| ||||||||| ||||| |||||    
T  52776097 gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtttctgattcaattgctcaaactatcgtatt 52776176  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 30757929 - 30757876
Alignment:
Q  117 gatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaa 170  Q
    |||||||| ||||||||||||| | ||| |||||||||||||| ||||||||||    
T  30757929 gatcaatgcagcgtgctttgggtgttaagaacaagcttccctttatcaatggaa 30757876  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 30765381 - 30765328
Alignment:
Q  117 gatcaatgtagcgtgctttgggagctaaaaacaagcttcccttcatcaatggaa 170  Q
    |||||||| ||||||||||||| | ||| |||||||||||||| ||||||||||    
T  30765381 gatcaatgcagcgtgctttgggtgttaagaacaagcttccctttatcaatggaa 30765328  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 14506480 - 14506402
Alignment:
Q  206 cattcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttgatgtttggg 284  Q
    ||||| |||||||||||||| ||| |||| |  |||||||| ||||| || |||||||||||||| |  ||||||||||    
T  14506480 cattcatggattatcaattcagtttctgaatccattgctcaaactattgtttttcatgattacgcttcagatgtttggg 14506402  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 20701058 - 20700980
Alignment:
Q  206 cattcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttgatgtttggg 284  Q
    |||||||||| ||| ||||| ||| || ||| |||||||||||||||||| ||||||||| | |  |||||||||||||    
T  20701058 cattcttggaatattaattcagtttcttattcaattgctcagactatagtttttcatgataatgattttgatgtttggg 20700980  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 17118563 - 17118604
Alignment:
Q  238 aattgctcagactatagtatttcatgattacgcctttgatgt 279  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
T  17118563 aattgctcagactatagtattccatgaatacgccattgatgt 17118604  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 29497874 - 29497978
Alignment:
Q  179 gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttgatg 278  Q
    ||||||||||| ||||||||| ||| ||| |||||| |||  |||| |||| ||||||| |||||||| ||||| || ||  |||||   ||||||||||    
T  29497874 gcttgggaacgatgcaaccatgtggtacaatcttggcttactaattttgtttctgatttcattgctcaaactattgttttctatgatactgcctttgatg 29497973  T
Q  279 tttgg 283  Q
    |||||    
T  29497974 tttgg 29497978  T

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Target: scaffold0329 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 9426 - 9505
Alignment:
Q  179 gcttgggaacgctgcaaccatttgggacattcttggattatcaattctgttactgatttaattgctcagactatagtatt 258  Q
    ||||||||||| ||||||||||||| ||| |||||| | || ||||| ||  |||||| ||||||||| ||||| |||||    
T  9426 gcttgggaacgatgcaaccatttggtacaatcttggctcattaattcagtctctgattcaattgctcaaactatcgtatt 9505  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 42134220 - 42134298
Alignment:
Q  206 cattcttggattatcaattctgttactgatttaattgctcagactatagtatttcatgattacgcctttgatgtttggg 284  Q
    ||||| |||||||||||||| ||| |||| |  |||||||| ||||| || ||||| |||||||| || ||||||||||    
T  42134220 cattcatggattatcaattccgtttctgaatccattgctcaaactattgtctttcacgattacgctttagatgtttggg 42134298  T

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