View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476_low_15 (Length: 241)
Name: NF4476_low_15
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 25226886 - 25227098
Alignment:
| Q |
12 |
atgattacgcctttgatgtttgggaggatttgaaatagcgcttctctaagattgatcgccttagaa-ttgcaaatatgcgttcttcctttaacaatctta |
110 |
Q |
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| T |
25226886 |
atgattacgcctttgatgtttgggaggatttgaaagagcgcttctctaagattgatcgccttagaaattgcaaatatgcgttcttcctttaacaatctta |
25226985 |
T |
|
| Q |
111 |
gacaaggtaccaaatatgtgttagagtatttcattgaaatgaaagctttatgggaagaattacattcccatcatcctctcccaaactatgcttgtccata |
210 |
Q |
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| T |
25226986 |
gacaaggtaccaaatatgtgttagagtatttcattgaaatgaaagctttatgggaagaattacattcccatcgtcctctcccaaactatgcttgtccata |
25227085 |
T |
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| Q |
211 |
tcaatgcagatgt |
223 |
Q |
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||||||||||||| |
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| T |
25227086 |
tcaatgcagatgt |
25227098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 30757744 - 30757567
Alignment:
| Q |
23 |
tttgatgtttgggaggatttgaaatagcgcttctctaagattgatcgccttagaattgcaaatatgcgttct-----tcctttaacaatcttagacaagg |
117 |
Q |
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| T |
30757744 |
tttgatttttgggaggatttgaaggaacgtttttctaagattgatcgtattagaattgccaatttgcgttctggaattaaattaacaatcttaggcaaaa |
30757645 |
T |
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| Q |
118 |
taccaaatatgtgttagagtatttcattgaaatgaaagctttatgggaagaattacattcccatcatcctctcccaaa |
195 |
Q |
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| T |
30757644 |
taccaaatttgtgttggattatttcactgaaatgaaagctttgtgggaagaattacattctcatcctcctctcccaaa |
30757567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 30765196 - 30765019
Alignment:
| Q |
23 |
tttgatgtttgggaggatttgaaatagcgcttctctaagattgatcgccttagaattgcaaatatgcgttct-----tcctttaacaatcttagacaagg |
117 |
Q |
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| T |
30765196 |
tttgatttttgggaggatttgaaggaacgtttttctaagattgatcgtattagaattgccaatttgcgttctggaattaaattaacaatcttaggcaaaa |
30765097 |
T |
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| Q |
118 |
taccaaatatgtgttagagtatttcattgaaatgaaagctttatgggaagaattacattcccatcatcctctcccaaa |
195 |
Q |
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| T |
30765096 |
taccaaatttgtgttggattatttcactgaaatgaaagctttgtgggaagaattacattctcatcctcctctcccaaa |
30765019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 5921491 - 5921376
Alignment:
| Q |
54 |
tctctaagattgatcgccttagaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatgaa |
153 |
Q |
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|||||||| |||||||| || | ||||||||| |||||||||| |||||||| | | ||||||| | |||||||| | |||||||| | |||| |||| |
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| T |
5921491 |
tctctaaggttgatcgcatttgtattgcaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaa |
5921392 |
T |
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| Q |
154 |
agctttatgggaagaa |
169 |
Q |
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||| |||||||||||| |
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| T |
5921391 |
agcgttatgggaagaa |
5921376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 15447291 - 15447397
Alignment:
| Q |
63 |
ttgatcgccttagaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatgaaagctttatg |
162 |
Q |
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||||||| ||||||||| |||| | ||||| ||| |||||||||| | ||||||| | | || ||| || |||||||||| ||| ||||||||||||| |
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| T |
15447291 |
ttgatcgtattagaattgaaaatttacgttcctccattaacaatctcaaacaaggttcaatatttgttttggagtatttcactgagttgaaagctttatg |
15447390 |
T |
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| Q |
163 |
ggaagaa |
169 |
Q |
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||||||| |
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| T |
15447391 |
ggaagaa |
15447397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 20325770 - 20325678
Alignment:
| Q |
77 |
attgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatgaaagctttatgggaagaa |
169 |
Q |
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||||||||| ||||||||||| ||||||| | | ||||||| | |||| ||| | |||||||| | |||| ||||| |||||||||||||| |
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| T |
20325770 |
attgcaaatttgcgttcttccattaacaacttgaaacaaggtgcaaaatctgttcttgagtattttactgaattgaaatctttatgggaagaa |
20325678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 34893222 - 34893110
Alignment:
| Q |
77 |
attgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatgaaagctttatgggaagaattacatt |
176 |
Q |
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||||||||| | ||||| ||| ||||||| || | |||||| |||||| ||| ||||||||||| | |||| |||||||| | ||||||||| | ||| |
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| T |
34893222 |
attgcaaatctacgttcctccattaacaacctcaagcaaggttccaaatctgtcttagagtattttactgaattgaaagctctttgggaagaactttatt |
34893123 |
T |
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| Q |
177 |
cccatcatcctct |
189 |
Q |
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|||||| |||||| |
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| T |
34893122 |
cccatcgtcctct |
34893110 |
T |
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