View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476_low_2 (Length: 501)
Name: NF4476_low_2
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 54674734 - 54674233
Alignment:
| Q |
1 |
tcatccaaaactaacatagtaaaatatctcaaaatgcagaaacaatatacgatgaacaaaatcagttgtcttgcgactacaaggtaactgaaatatcaaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54674734 |
tcatacaaaactaacatagtaaaatatctcaaaatgcagaaacaatatacgatgaacaaaatcagttgtcttgcgactacaaggtaactgaaatatcaaa |
54674635 |
T |
|
| Q |
101 |
tagccaaacagttttgttaattgcatgaaccatgaagtagtatactataatggtgttaatggtacatagcagcagtactgtaatcatcagaattttattn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
54674634 |
tagccaaacagttttgttaattgcatgaaccatgaagtagtatactataatggtgataatggtacataccagcagtactgtaatcatcagaatttcatta |
54674535 |
T |
|
| Q |
201 |
nnnnnngtaccgtaattcagaggtttatannnnnnn-ggtatatggttgccaagaactgtcaaattcttgtcaaccaactgtatattgacacctggctta |
299 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54674534 |
aaaaaggtaccgtaattcagaggtttatattttttttggtatatggttgccaagaactgtcaaattcttgtcaaccaactgtatattgacacctggctta |
54674435 |
T |
|
| Q |
300 |
acctatttctaagccaatagacactcgacatctaccctttcattccgttccctcattgtccttttttcttccactgtcttgcagttgtgtggattggacg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54674434 |
acctatttctaagccaatagacactcgacatctaccctttcattccgttccctcattgtccttttttcttccactgtcttgcagttgtgtggattggacg |
54674335 |
T |
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| Q |
400 |
catgaaatttttgtattataagttgattagatctattcaactaaattatagtattgaaatttgaaattaaaagtacacggtctttatcatcatttgtgtt |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54674334 |
catgaaatttttgtattataagttgattagatctattcaactaaattatagtattgaaatttgaaattaaaagtacacggtctttctcatcatttgtgtt |
54674235 |
T |
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| Q |
500 |
at |
501 |
Q |
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| T |
54674234 |
at |
54674233 |
T |
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