View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4476_low_3 (Length: 486)

Name: NF4476_low_3
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4476_low_3
NF4476_low_3
[»] chr6 (1 HSPs)
chr6 (377-462)||(33052146-33052227)
[»] scaffold0755 (1 HSPs)
scaffold0755 (341-378)||(3895-3932)
[»] chr3 (2 HSPs)
chr3 (341-378)||(11395470-11395507)
chr3 (341-378)||(46232166-46232203)
[»] chr2 (1 HSPs)
chr2 (341-378)||(9210403-9210440)
[»] chr4 (1 HSPs)
chr4 (377-425)||(3652993-3653041)
[»] chr1 (1 HSPs)
chr1 (341-378)||(32438783-32438820)
[»] chr8 (1 HSPs)
chr8 (214-258)||(14602147-14602191)


Alignment Details
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 462
Target Start/End: Complemental strand, 33052227 - 33052146
Alignment:
Q  377 ttggaatttgtaaccctcaacaagagttttagagaaaatgaagactctttagtattcataatgaacgagaccatgcttttgtaaac 462  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    |||| ||||||||| ||| |||| ||||||||||    
T  33052227 ttggaattagtaaccctcaataagagttttagagaaaatgaagactct----tatttataatgaacaagaacatgtttttgtaaac 33052146  T

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Target: scaffold0755 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 3895 - 3932
Alignment:
Q  341 tctaataaggacaaccacatggtatgcaagagaaactt 378  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3895 tctaataaggacaaccacatggtatgcaagagaaactt 3932  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 11395470 - 11395507
Alignment:
Q  341 tctaataaggacaaccacatggtatgcaagagaaactt 378  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11395470 tctaataaggacaaccacatggtatgcaagagaaactt 11395507  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 46232203 - 46232166
Alignment:
Q  341 tctaataaggacaaccacatggtatgcaagagaaactt 378  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46232203 tctaataaggacaaccacatggtatgcaagagaaactt 46232166  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 9210403 - 9210440
Alignment:
Q  341 tctaataaggacaaccacatggtatgcaagagaaactt 378  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9210403 tctaataaggacaaccacatggtatgcaagagaaactt 9210440  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 3652993 - 3653041
Alignment:
Q  377 ttggaatttgtaaccctcaacaagagttttagagaaaatgaagactctt 425  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  3652993 ttggaatcagtaaccctcaataagagttttagagaaaatgaagactctt 3653041  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 32438820 - 32438783
Alignment:
Q  341 tctaataaggacaaccacatggtatgcaagagaaactt 378  Q
    |||||||||||||||||||||||||||||||| |||||    
T  32438820 tctaataaggacaaccacatggtatgcaagaggaactt 32438783  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 14602191 - 14602147
Alignment:
Q  214 tttagatataacatggagtttaataatcctcttatttttgtgttg 258  Q
    |||||||||||||||||| |||| ||| ||||||||||| |||||    
T  14602191 tttagatataacatggagcttaaaaattctcttatttttatgttg 14602147  T

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