View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4476_low_4 (Length: 442)
Name: NF4476_low_4
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 29906497 - 29906843
Alignment:
| Q |
16 |
catcatcatgtgattctctctagactctagggtacttttcaagatgtgcatcacgtatctatgaacaacaaannnnnnnctaagcttaaattcaaaagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29906497 |
catcatcatgtgattctctctagactctagggtacttttcaagatgtgcatcacgtatctatgaacaacaaatttttttctaagcttaaattcaaaagtt |
29906596 |
T |
|
| Q |
116 |
tgaattcaagtagcacatgtattaccattcaaataaaatcaatatagataaaacaatttgtaatatttaacaactaatgcaattaatgcataagaatcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29906597 |
tgaattcaagtagcacatgtattaccattcaaataaaatcaatatagataaaacaatttgtaatatttaacaactaatgcaattaatgcataagaatcaa |
29906696 |
T |
|
| Q |
216 |
ttcatattcacaagttcgttgaagaacatgtgttacaaaatttaataagtaggttcatctattaaagggtaatattaactattaaagggtatgtgaaatt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29906697 |
ttcatattcacaagttcgttgaagaacatgtgttacataatttaataagtaggttcatctattaaagggtaatattaactattaaagggtatgtg----- |
29906791 |
T |
|
| Q |
316 |
aaacaaagtaagatatatttgtgttggacccaccacctttgacacaatgagt |
367 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29906792 |
aaacaatgtaagatatatttgtgttggacccaccacctttgacacaatgagt |
29906843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University