View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476_low_5 (Length: 439)
Name: NF4476_low_5
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 1810747 - 1810504
Alignment:
| Q |
1 |
agtgtcaacagtagagacagagaactcctcaaaacgagcagaagaaatttcagtatctacaaaaacgaaaatcaaagttcaagagaaactaataacatgt |
100 |
Q |
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| T |
1810747 |
agtgtcaacagtagagacagagaactcctcaaaacgagctgaagaaatttcagtatctacaaaaacgaaaatcaaagttcaagagaaactaataacatgt |
1810648 |
T |
|
| Q |
101 |
aaattatgatctaggattgaaataacttatgaagcatgcagacagaaaaagaaaaactggcacctgataacacagaagcagtaggaagacatctactttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1810647 |
aaattatgatctaggattgaaataacttatgaagcatgcagacagaaaaagaaaaactggcacctgataacacagaagcagtaggaagacatcgactttg |
1810548 |
T |
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| Q |
201 |
ttccctataaaaaagaaacggatttcaaaattcatcttatatca |
244 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1810547 |
ttccctataaaaaagaaacagatttcaaaattcatcttatatca |
1810504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 243 - 431
Target Start/End: Complemental strand, 1809936 - 1809749
Alignment:
| Q |
243 |
caaacacacctaattaagttgtttatccaaa------catgtcctaagtcaagaaagtcatgttcagtctcagccctcaggtcatgttacatagtatttg |
336 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1809936 |
caaacacacctaattaagttgtttatccaaatccaaacatgtcctaagtcaagaaagtcatgttcagtctcagccctcaggtcatgttacatagtatttg |
1809837 |
T |
|
| Q |
337 |
ctcaaacaaacatgcaattgaaataaaattcccaaagaaaagaagnnnnnnnnngtaatgccttttgaaaatcctcattgcactgtgcctatgct |
431 |
Q |
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| T |
1809836 |
ctcaaacaaacatgcaattgaaataaaattcccaaataaaa-aag------aaagtaatgccttttcaaaatcctcattgcactgtgcctatgct |
1809749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 42131580 - 42131539
Alignment:
| Q |
237 |
ttatatcaaacacacctaattaagttgtttatccaaacatgt |
278 |
Q |
| |
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|||||| | |||| |||||||||||||||||||||||||||| |
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| T |
42131580 |
ttatatgatacacgcctaattaagttgtttatccaaacatgt |
42131539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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