View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4476_low_7 (Length: 431)
Name: NF4476_low_7
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_low_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 24750581 - 24750158
Alignment:
| Q |
8 |
aaagaggacataccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagc |
107 |
Q |
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| T |
24750581 |
aaagaggacataccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagc |
24750482 |
T |
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| Q |
108 |
aaaaaccgccgtnnnnnnnggagtcgtagcaccaatagcttgattaaaagacacaggaagatatcttagagaaatattccctccaaccacagacaaacaa |
207 |
Q |
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| T |
24750481 |
aaaaaccgccgtaaaaaacggtgtcgtagcaccaatagcttgattaaaagacacaggaagatatcttagagaaatattccctccaaccacagacaaacaa |
24750382 |
T |
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| Q |
208 |
aatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgcaatgtaacttaaca |
307 |
Q |
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| T |
24750381 |
aatataagtccaagtgatgatatcttcacaaattgtacccttgatctcactgtttgcaatggcaccaccttcatccatgatattgcaatgtaacttaaca |
24750282 |
T |
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| Q |
308 |
ttgaacatgccatcatgtgacatagtgttaagaatattgggtacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacaccaatgtttga |
407 |
Q |
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| T |
24750281 |
ttgaacatgccatcatgtgacatagtgttaagaatattgggtacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacaccaatgtttga |
24750182 |
T |
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| Q |
408 |
tgcataccaaaaacttatcaaact |
431 |
Q |
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| T |
24750181 |
tgcataccaaaaacttatcaaact |
24750158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 31330637 - 31330464
Alignment:
| Q |
15 |
acataccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagcaaaaacc |
114 |
Q |
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| T |
31330637 |
acataccccactagcaataacaacaccagtaacaacaggaacaagggtaagataagtgagacaagcctccctcttaaaggtcataatataagcaaaaatg |
31330538 |
T |
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| Q |
115 |
gccgtnnnnnnnggagtcgtagcaccaatagcttgattaaaagacacaggaagatatcttagagaaatattccc |
188 |
Q |
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| T |
31330537 |
gcagtaaagaaaggcgtagtcgcgccaatagcctgattaaacgacacaggaagatatcgaagcgaaatattccc |
31330464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 31330303 - 31330236
Alignment:
| Q |
349 |
tacttgaaaccatagttgcttaaaaggtacttgtttaatagtaatacaccaatgtttgatgcatacca |
416 |
Q |
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| T |
31330303 |
tacttgaaaccatagttgcttaacaaatacttgttcaatagaagaacaccaatgttggatgaatacca |
31330236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 35016438 - 35016286
Alignment:
| Q |
18 |
taccccactagcaatcataacaccagtaacaacaggtacaagagccatataagtaagccaaccctccctcttaagggtcataagataagcaaaaaccgcc |
117 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||| |||| || || || |||||| ||||||||||||||| |
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| T |
35016438 |
taccccactagcaatgataacaccagtaacaacaggaacaagagcaagataagtaagccaagcctctcttttgagcgtcatagcataagcaaaaaccgca |
35016339 |
T |
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| Q |
118 |
gtnnnnnnnggagtcgtagcaccaatagcttgattaaaagacacaggaagata |
170 |
Q |
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| T |
35016338 |
gtaaaaaacggcgtagtagcaccgatagcttgattaaacgacacaggaagata |
35016286 |
T |
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