View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4476_low_8 (Length: 416)
Name: NF4476_low_8
Description: NF4476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4476_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 173 - 406
Target Start/End: Complemental strand, 24854775 - 24854541
Alignment:
| Q |
173 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
272 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24854775 |
atgagcaaccaagaggtgatggagtttttccgcacaatagcatttggggttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
24854676 |
T |
|
| Q |
273 |
tgaacaaatactccgaggcattat-cattcaaagaatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaa |
371 |
Q |
| |
|
||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24854675 |
tgaacaattagtccgaggcatttttcattcaaagaatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaa |
24854576 |
T |
|
| Q |
372 |
ccgtaattacaactttgttgccacgctgctctctg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24854575 |
ccgtaattacaactttgttgccacgctgctctctg |
24854541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 173 - 405
Target Start/End: Original strand, 24537613 - 24537846
Alignment:
| Q |
173 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
272 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| | |||| |
|
|
| T |
24537613 |
atgagcaaccaagagctgatggagtttttccgcgcaatagcatttggagttgaccatgaagtagttgattccagtggttatattcaaatggttgatgaca |
24537712 |
T |
|
| Q |
273 |
tgaacaaatactccgaggca-ttatcattcaaagaatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaa |
371 |
Q |
| |
|
| ||||| |||| || || || || || || |||||||||||||||||| || |||||||||||||| || |||| ||||| || ||||||||||| |
|
|
| T |
24537713 |
tcaacaattactttgacacatttttccttaaacgaatctggaaaatagtgtcgagttcattcacataccgtcatcatgggtggctgtttagatttatgaa |
24537812 |
T |
|
| Q |
372 |
ccgtaattacaactttgttgccacgctgctctct |
405 |
Q |
| |
|
||| ||||||||||| ||||| ||| | |||||| |
|
|
| T |
24537813 |
ccgcaattacaacttcgttgcaacggttctctct |
24537846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 24726885 - 24726773
Alignment:
| Q |
173 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
272 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||||||| |||||| ||||||||| ||||||||||| | ||||||||||||||||||| | |||| |
|
|
| T |
24726885 |
atgagcaaccaagaggtgatggagtttttccgcaaaatagcacttggagctgaccataaggtagttgattctagtagttatattcaaatggttgatgaca |
24726786 |
T |
|
| Q |
273 |
tgaacaaatactc |
285 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
24726785 |
taaacaattactc |
24726773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 24826745 - 24826633
Alignment:
| Q |
173 |
atgagcaactaagaggtgatagagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttcacgaca |
272 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||| ||||||| ||||| |||||||||| ||||||||||||| || |||||||||||||||| | |||| |
|
|
| T |
24826745 |
atgagcaaccaagagctgatggagtttttccgcaaaatagcacttggaattgaccataaggtagttgattccagtacttatattcaaatggttgatgaca |
24826646 |
T |
|
| Q |
273 |
tgaacaaatactc |
285 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
24826645 |
tcaacaattactc |
24826633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 24846867 - 24846818
Alignment:
| Q |
126 |
tataaatatcttacaaccagttcacattttgaattttataaacattaatg |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24846867 |
tataaatatcttacaaccagttcacattttgaattttataaacaataatg |
24846818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 24846930 - 24846875
Alignment:
| Q |
42 |
tacaacaaattaatacatgtgtgacatgtattcaatttctatttcttgcatgtcaa |
97 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||||| |||||||| ||||| |
|
|
| T |
24846930 |
tacaataaattaatacatgtctaacatgtattcaatttctacttcttgcacgtcaa |
24846875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 392
Target Start/End: Complemental strand, 24797516 - 24797430
Alignment:
| Q |
306 |
aatctggaaaatagtgttgaattcattcacataccatcgtcataaatggcttttaagatttatgaaccgtaattacaactttgttgc |
392 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| | |||| ||||| ||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
24797516 |
aatctggaaaatagtgtcgagttcattcacataccggcatcattggtggctgttaagatttttgaaccccaattacaacttcgttgc |
24797430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 24837676 - 24837627
Alignment:
| Q |
126 |
tataaatatcttacaaccagttcacattttgaattttataaacattaatg |
175 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| |||| ||||| |
|
|
| T |
24837676 |
tataaatatcttaaaaccagttcacattttgagttttatcaacaataatg |
24837627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 24697040 - 24696968
Alignment:
| Q |
194 |
gagtttttccgcacaatagcatttggagttgaccataaagtagttgattccaatagttatattcaaatggttc |
266 |
Q |
| |
|
|||| |||||||| | ||||||| |||||||||||||||||||||| || || || ||||| | ||||||||| |
|
|
| T |
24697040 |
gagtatttccgcaaagtagcattgggagttgaccataaagtagttgcttacagtatttatactgaaatggttc |
24696968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University