View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4477-Insertion-1 (Length: 710)

Name: NF4477-Insertion-1
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4477-Insertion-1
NF4477-Insertion-1
[»] chr3 (2 HSPs)
chr3 (8-560)||(48578109-48578661)
chr3 (622-690)||(48577984-48578052)
[»] chr1 (1 HSPs)
chr1 (39-117)||(43873963-43874040)
[»] chr2 (1 HSPs)
chr2 (49-117)||(37295189-37295258)
[»] chr5 (3 HSPs)
chr5 (139-233)||(8776790-8776883)
chr5 (139-231)||(8763700-8763791)
chr5 (166-233)||(8775508-8775575)
[»] chr4 (1 HSPs)
chr4 (37-118)||(12678797-12678879)
[»] chr8 (1 HSPs)
chr8 (139-224)||(929598-929683)
[»] chr7 (1 HSPs)
chr7 (37-82)||(35824463-35824508)


Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 48578661 - 48578109
Alignment:
Q  8 agtatcacagcaggatttggtttatgtaggttgtagagtcaaatgcattttaatggtgagatcatccacataactctcaagtttttcttcacaattgaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48578661 agtatcacagcaggatttggtttatgtaggttgtagagtcaaatgcattttaatggtgagatcatccacataactttcaagtttttcttcacaattgaga 48578562  T
Q  108 ggatccaaatccatcatagcaactaacaaatacaaaatccccaattttagacaaatcaaaaaccccaataatgatttcacaacacaaatatattagtcat 207  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48578561 ggatccaaatccatcacagcaactaacaaagacaaaatccccaattttagacaaatcaaaaaccccaatattgatttcacaacacaaatatattagtcat 48578462  T
Q  208 agacccaattgcataatgaatcaaccgacggaatacaattgagtcataaaataatcccaaattaaaaaaccccaacaatggggattttgaaattcaatta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48578461 agacccaattgcataatgaatcaaccgacggaatacaattgagtcataaaataatccaaaattaaaaaaccccaacaatggggattttgaaattcaatta 48578362  T
Q  308 cctgtttctgttatgttgctgttggaggcccaatgaagaggagttggaagcttggatttcgctgcggtgttggtgggcggtggaggccaaaccagaaaga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48578361 cctgtttctgttatgttgctgttggaggcccaatgaagaggagttggaagcttggatttcgctgcggtgttggtgggcggtggaggccaaaccagaaaga 48578262  T
Q  408 tcccgcagaaccaaacaaagagagtggaagaaaattgggttgcacgcacaagagagagaaggaactgggcggatcgtgtgacagtgagagggaagcaggg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48578261 tcccgcagaaccaaacaaagagagtggaagaaaattgggttgcgcgcacaagagagagaaggaactgggcggatcgtgtgacagtgagagggaagcaggg 48578162  T
Q  508 tgtgtgtcaggtgtggcgcagtggaggtgcttgggaagctgctgccggcaaca 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48578161 tgtgtgtcaggtgtggcgcagtggaggtgcttgggaagctgctgccggcaaca 48578109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 622 - 690
Target Start/End: Complemental strand, 48578052 - 48577984
Alignment:
Q  622 tggattgagtcctgggtcaaaggtgcaaaacaaaatttcagagttcaatatgcaaaagatatagggtag 690  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48578052 tggattgagtcctgggtcaaaggtgcaaaacaaaatttcagagttcaatatgcaaaagatatagggtag 48577984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 43874040 - 43873963
Alignment:
Q  39 tgtagagtcaaatgcattttaatggtgagatcatccacataactctcaagtttttcttcacaattgagaggatccaaat 117  Q
    ||||||| | |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  43874040 tgtagagcccaatgcattttaatggtgaaatcatccacataaccctcaagttttt-ttcacaattgagaggatccaaat 43873963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 37295258 - 37295189
Alignment:
Q  49 aatgcattttaatggtgagatcatccacataac--tctcaagtttttcttcacaattgagaggatccaaat 117  Q
    ||||||| |||||||||||||||||||| ||||  |||||||||||| ||| |||||||||| ||||||||    
T  37295258 aatgcatcttaatggtgagatcatccacttaaccttctcaagttttt-ttcgcaattgagagaatccaaat 37295189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 8776790 - 8776883
Alignment:
Q  139 acaaaatccccaattttagacaaatcaaaaaccccaataatgatttcacaacacaaatatattagtcatagacccaattgcataatgaatcaacc 233  Q
    |||||||||| |||||| |||| ||||||| ||| || |||| ||||||||||| ||||||||| ||| |  ||||||| |||||| ||||||||    
T  8776790 acaaaatcccaaattttggacacatcaaaa-ccctaacaatggtttcacaacactaatatattactcaaaatcccaatttcataatcaatcaacc 8776883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 8763791 - 8763700
Alignment:
Q  139 acaaaatccccaattttagacaaatcaaaaaccccaataatgatttcacaacacaaatatattagtcatagacccaattgcataatgaatcaa 231  Q
    |||||||||| |||||| ||||  |||||| ||| || |||| ||||||||||| ||||||||| |||||  ||||||| |||||| ||||||    
T  8763791 acaaaatcccaaattttggacacttcaaaa-ccctaacaatggtttcacaacactaatatattactcataatcccaatttcataatcaatcaa 8763700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 8775508 - 8775575
Alignment:
Q  166 aaaaccccaataatgatttcacaacacaaatatattagtcatagacccaattgcataatgaatcaacc 233  Q
    ||||||| || |||| ||||||||||| ||||||||| |||||  ||||||| |||||| ||||||||    
T  8775508 aaaaccctaacaatggtttcacaacactaatatattactcataatcccaatttcataatcaatcaacc 8775575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 12678797 - 12678879
Alignment:
Q  37 gttgtagagtcaaatgcattttaatggtgagatcatccacataactctcaagtttttctt-cacaattgagaggatccaaatc 118  Q
    ||||||||||| ||||| |||||||||| | |||||  | |||||  |||||||||| || ||||||||||||||||||||||    
T  12678797 gttgtagagtccaatgctttttaatggtaatatcatttaaataacattcaagtttttttttcacaattgagaggatccaaatc 12678879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 929683 - 929598
Alignment:
Q  139 acaaaatccccaattttagacaaatcaaaaaccccaataatgatttcacaacacaaatatattagtcatagacccaattgcataat 224  Q
    |||||||||| ||||||  ||| || ||||||||||| | ||| | ||||||| |||||||| |||||||| | ||||||||||||    
T  929683 acaaaatccctaattttgtacatatgaaaaaccccaacagtgaatccacaacataaatatatcagtcatagtctcaattgcataat 929598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 35824508 - 35824463
Alignment:
Q  37 gttgtagagtcaaatgcattttaatggtgagatcatccacataact 82  Q
    ||||||||| | |||| |||||||| ||||||||||||||||||||    
T  35824508 gttgtagagcccaatgaattttaatagtgagatcatccacataact 35824463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University