View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4477-Insertion-2 (Length: 426)
Name: NF4477-Insertion-2
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4477-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 11343851 - 11343425
Alignment:
| Q |
8 |
tccgctcattctcaaagt----gtcaaaaatgccccatacgtatgttaactcacgtagcgtgacttaactcatgtcagttataatgttagcgtaacttaa |
103 |
Q |
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|||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11343851 |
tccgctcactctcaaagtaaaagtcaaaaatgccccatacgcatgttaactcaggtagcgtgacttaactcataccagttataatgttagcgtaacttaa |
11343752 |
T |
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| Q |
104 |
gtcacgcagcgtgagtta-ctcatgcagcatttctcttcttttcaccatcagcctccaacaactacacctattcttcttcttctt---tctgcaacttcc |
199 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11343751 |
gtcacgcagcgtgagttaactcacgcagcatttctcttcttttcaccatcagcctccaacaactacacctattcttcttcttcttctttctgcaacttcc |
11343652 |
T |
|
| Q |
200 |
ccttgtttttcatccacttataatatctctcaaattattgccttgtcctttccttctctcttccataattccttctctcaaattatagaatgttgttgag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11343651 |
ccttgtttttcatccacttataatatctctcaaattattggcttgtcctttccttctctcttccataattccttctctcaaattatagaatgatgttgag |
11343552 |
T |
|
| Q |
300 |
ttttaacaatcggagttgagtcttaaaattattaattttgataacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttcgaag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11343551 |
ttttaacaatcggagttgagtcttaaaattattaattttgataacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttctaag |
11343452 |
T |
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| Q |
400 |
ttgttaaattattgtttattcttacta |
426 |
Q |
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| T |
11343451 |
ttgttaaattattgtttattcttacta |
11343425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 50663926 - 50663970
Alignment:
| Q |
30 |
aaaatgccccatacgtatgttaactcacgtagcgtgacttaactca |
75 |
Q |
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| T |
50663926 |
aaaatgcccc-tacgcatgttaactcacgtagcgtgagttaactca |
50663970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 46 - 423
Target Start/End: Complemental strand, 38677674 - 38677296
Alignment:
| Q |
46 |
atgttaactcacgtagcgtgacttaactcatgtcagttataatgttagcgtaacttaagtcacgcagcgtgagtta-ctcatgc-agc---atttctctt |
140 |
Q |
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||||||||| ||||||||||| ||| |||| | |||| || ||||||| || |||||||||||||| ||||||||| |||| | || ||||||||| |
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| T |
38677674 |
atgttaacttacgtagcgtgaattatctcacgccagt-atgatgttagtgtgacttaagtcacgcaacgtgagttaactcacgttagttagatttctctt |
38677576 |
T |
|
| Q |
141 |
cttttcaccatcagcctccaacaactacacctattcttcttcttctttctgcaacttccccttgtttttcatccacttataatatctctcaaattattgc |
240 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38677575 |
ctttttaccatcagctaccaacaactacacctattcttcttcttttt---gcaacttccccttgtttttcatccacttataatatctctcaaattattgg |
38677479 |
T |
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| Q |
241 |
cttgtcctttccttctctcttccataattccttctctcaaattatagaatgttgttgagttttaacaatcggagttgagtcttaaaattattaattttga |
340 |
Q |
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| T |
38677478 |
cttgtcctttccttctctcttccataattccttctctcaaattatagaatgttgttgagttttaacaatcggagttgagtcttaaaattattaattttga |
38677379 |
T |
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| Q |
341 |
taacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttcgaagttgttaaattattgtttattctta |
423 |
Q |
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| T |
38677378 |
taacaaattaagtatgaaagagatgagatgcaaaaatctatgaaattgaagcttctaaattgttaaattattatttattctta |
38677296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 9765399 - 9765459
Alignment:
| Q |
48 |
gttaactcacgtagcgtgacttaactcatgtcagttataatgttagcgtaacttaagtcac |
108 |
Q |
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| T |
9765399 |
gttaagtcacatagcgtgagttaacttatgtcagttatgatgttagcgtgacttaaatcac |
9765459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 17696231 - 17696311
Alignment:
| Q |
41 |
tacgtatgttaactcacgtagcgtgacttaactcatgtcagttataatgttagcgtaacttaagtcacgcagcgtgagtta |
121 |
Q |
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| T |
17696231 |
tacgcatgttaactcacgtagcgtgagttaactcatgtcagttataagagtagcgtgacttaagtcatgcaacgtgagtta |
17696311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 11573680 - 11573774
Alignment:
| Q |
26 |
gtcaaaaatgccccatacgtatgttaactcacgtagcgtgacttaactcatgtcagttataatgttagcgtaacttaagtcacgcagcgtgagtta |
121 |
Q |
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|||||||||||||| |||||||||||||| |||||||||| ||||| || |||||||| | | |||||||||||||||||||||||||||| |
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| T |
11573680 |
gtcaaaaatgcccc-tacgtatgttaacttgcgtagcgtgagttaacatgtgctagttataaggagaacgtaacttaagtcacgcagcgtgagtta |
11573774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 13552777 - 13552852
Alignment:
| Q |
46 |
atgttaactcacgtagcgtgacttaactcatgtcagttataatgttagcgtaacttaagtcacgcagcgtgagtta |
121 |
Q |
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||||||||||||||||| ||| |||||||| || |||| |||||| || |||||||||||||||||||||||| |
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| T |
13552777 |
atgttaactcacgtagcttgagttaactcacaccaattatgatgttaatgtgacttaagtcacgcagcgtgagtta |
13552852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 5729116 - 5729048
Alignment:
| Q |
49 |
ttaactcacgtagcgtgacttaactcatgtcagttataatgttagcgtaacttaagtcacgcagcgtga |
117 |
Q |
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|||| ||||||| ||||| ||||||||| |||||||||| | ||| |||||||||||||||||||| |
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| T |
5729116 |
ttaattcacgtaacgtgagttaactcatatcagttataagagaaacgtgacttaagtcacgcagcgtga |
5729048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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