View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4477-Insertion-3 (Length: 410)

Name: NF4477-Insertion-3
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4477-Insertion-3
NF4477-Insertion-3
[»] chr6 (8 HSPs)
chr6 (8-410)||(27988117-27988519)
chr6 (229-410)||(28069235-28069416)
chr6 (167-403)||(27998114-27998350)
chr6 (225-410)||(28028873-28029058)
chr6 (225-396)||(27909169-27909340)
chr6 (285-347)||(28013802-28013864)
chr6 (289-399)||(28087781-28087891)
chr6 (54-111)||(27997941-27997998)
[»] chr5 (1 HSPs)
chr5 (225-399)||(1436398-1436572)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 27988117 - 27988519
Alignment:
Q  8 cgctctactccgttaacatttctaatatcggcattgtcacatctagaccttagaatagctttttatatttcttcattgtatttccactataataaattac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27988117 cgctctactccgttaacatttctaatatcggcattgtcacatctagaccttagaatagctttttatatttcttcattgtatttccactataataaattac 27988216  T
Q  108 gacagagtatttacaaccatttctaatattgacattgttatttaatatagattttatgattcctattttattccctatattaatatgttgtgaatacttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27988217 gacagagtatttacaaccatttctaatattgacattgttatttaatatagattttatgattcctattttattccctatattaatatgttgtgaatacttg 27988316  T
Q  208 cagataatgatattgatttccttggggtcttcagaagcacattatactaagtttcttgtacctctagtgatctatgtacagtatattccaaaattattca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  27988317 cagataatgatattgatttccttggggtcttcagaagcacattatactaagaatcttgtacctctagtgatctttgtacagtatattccaaaattattca 27988416  T
Q  308 gatttttgcctcggctaattggccgatctccaacccaaatcatatttgcgtcggcctgggcaaatttaattatagttcttctcatttttatgttctctgc 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27988417 gatttttgcctcggctaattggccgatctccaacccaaatcatatttgcgtcggcctgagcaaatttaattataggtcttctcatttttatgttctctgc 27988516  T
Q  408 cca 410  Q
    |||    
T  27988517 cca 27988519  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 229 - 410
Target Start/End: Original strand, 28069235 - 28069416
Alignment:
Q  229 ttggggtcttcagaagcacattatactaagtttcttgtacctctagtgatctatgtacagtatattccaaaattattcagatttttgcctcggctaattg 328  Q
    ||||||||||||| ||||  | || |||||  |||| ||  |||| |||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  28069235 ttggggtcttcaggagcaattaatgctaagaatcttttaagtctattgatctttgtccagtatattgcaaaattattcagatttttgcctcggttaattg 28069334  T
Q  329 gccgatctccaacccaaatcatatttgcgtcggcctgggcaaatttaattatagttcttctcatttttatgttctctgccca 410  Q
    |||| ||| ||||||||||||||| ||||||  |  |||||||||||| || || |||||||||||||||| ||||||||||    
T  28069335 gccggtcttcaacccaaatcatatatgcgtcaactggggcaaatttaactacaggtcttctcatttttatgctctctgccca 28069416  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 167 - 403
Target Start/End: Original strand, 27998114 - 27998350
Alignment:
Q  167 ttcctattttattccctatattaatatgttgtgaa-tacttgcagataatgatattgatttccttggggtcttcagaagcacattatactaagtttcttg 265  Q
    ||||||||||||||  ||||||||||| | ||||| | ||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||  ||||     
T  27998114 ttcctattttattcagtatattaatat-tcgtgaaatgcttgcagataatgatattgctttccttggggtctttagtagcacataatactaagaatcttc 27998212  T
Q  266 tacctctagtgatctatgtacagtatattccaaaattattcagatttttgcctcggctaattggccgatctccaacccaaatcatatttgcgtcggcctg 365  Q
    ||||||||||||||| | ||||||| |||||||||||||  |||| ||   | |   |||| |||| ||||||||| | | ||||||||||||| | | |    
T  27998213 tacctctagtgatctctttacagtacattccaaaattatatagatattgttcgctcttaataggccaatctccaactccattcatatttgcgtcaggcgg 27998312  T
Q  366 ggcaaatttaattatagttcttctcatttttatgttct 403  Q
    |||| |||||| ||||| ||||||||  ||||||||||    
T  27998313 ggcatatttaactataggtcttctcacctttatgttct 27998350  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 410
Target Start/End: Original strand, 28028873 - 28029058
Alignment:
Q  225 ttccttggggtcttcagaagcacattatactaagtttcttgtacctctagtgatctatgtacagtatattccaaaattattcagatttttgcctcggcta 324  Q
    |||||||||||||||| |||||  |||| | |||  |||| ||  ||||||||||| ||||||||  ||| ||||||||||||||||||||||| || ||    
T  28028873 ttccttggggtcttcacaagcaatttatgccaagaatcttctaagtctagtgatctttgtacagttaattgcaaaattattcagatttttgccttgggta 28028972  T
Q  325 attggccgatctccaacccaaatcatatttgcgtcggcctgggcaaatttaattatagttcttctcatttttatgttctctgccca 410  Q
    |||||||| ||| |||||| |||||||| || ||| |||||||||||||||  | ||| ||||||| ||||| || ||||||||||    
T  28028973 attggccggtcttcaacccgaatcatatatgagtcagcctgggcaaatttagctgtaggtcttctcgtttttttgctctctgccca 28029058  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 225 - 396
Target Start/End: Original strand, 27909169 - 27909340
Alignment:
Q  225 ttccttggggtcttcagaagcacattatactaagtttcttgtacctctagtgatctatgtacagtatattccaaaattattcagatttttgcctcggcta 324  Q
    |||||||||||||||||  ||| ||||| | |||  |||| ||| | ||||||||| || ||||| | |||| | |||||||| ||||||||||||||||    
T  27909169 ttccttggggtcttcaggtgcaaattatgcgaagaatcttctacttatagtgatctttgcacagtttgttccgagattattcaaatttttgcctcggcta 27909268  T
Q  325 attggccgatctccaacccaaatcatatttgcgtcggcctgggcaaatttaattatagttcttctcattttt 396  Q
     |||||   ||||||| || ||||||||||| ||| |||||||||||||||||||||| |||||| ||||||    
T  27909269 tttggcaagtctccaatccgaatcatatttgtgtcagcctgggcaaatttaattatagctcttcttattttt 27909340  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 28013802 - 28013864
Alignment:
Q  285 acagtatattccaaaattattcagatttttgcctcggctaattggccgatctccaacccaaat 347  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||  ||||||||||||||    
T  28013802 acagtatattgcaaaattattcagatttttgcctaggataattggccagtctccaacccaaat 28013864  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 399
Target Start/End: Original strand, 28087781 - 28087891
Alignment:
Q  289 tatattccaaaattattcagatttttgcctcggctaattggccgatctccaacccaaatcatatttgcgtcggcctgggcaaatttaattatagttcttc 388  Q
    |||||||| | ||| |||||||||||||||| ||||||||| |  ||||||||   | ||||||| | ||| |||||||||||||| ||||||  |||||    
T  28087781 tatattcccagattgttcagatttttgcctctgctaattggtcagtctccaactggattcatattcgagtcagcctgggcaaatttcattataaatcttc 28087880  T
Q  389 tcatttttatg 399  Q
    | |||||||||    
T  28087881 tgatttttatg 28087891  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 27997941 - 27997998
Alignment:
Q  54 accttagaatagctttttatatttcttcattgtatttccactataataaattacgaca 111  Q
    |||||| ||||| ||| | |||||||||||||||||||||||||||||||| ||||||    
T  27997941 accttacaatagttttctgtatttcttcattgtatttccactataataaataacgaca 27997998  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 399
Target Start/End: Original strand, 1436398 - 1436572
Alignment:
Q  225 ttccttggggtcttcagaagcacattatactaagtttcttgtacctctagtgatctatgtacagtatattccaaaattattcagatttttgcctcggcta 324  Q
    |||||||||||| |||| |||| ||||| | ||   |||| |||  |||| ||||  |||||| |||||||||| |||||||||||||||||||| ||||    
T  1436398 ttccttggggtcatcaggagcaaattatgcaaaaaatcttctacgactagggatccttgtacaatatattccaagattattcagatttttgcctctgcta 1436497  T
Q  325 attggccgatctccaacccaaatcatatttgcgtcggcctgggcaaatttaattatagttcttctcatttttatg 399  Q
    ||||| |  |||||||||  | ||||||| |  || |||||||||||||| |||||   ||||||||||||||||    
T  1436498 attggtcagtctccaaccggattcatattcgaatcagcctgggcaaatttcattattaatcttctcatttttatg 1436572  T

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