View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4477_high_1 (Length: 538)
Name: NF4477_high_1
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4477_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 47527724 - 47528237
Alignment:
| Q |
17 |
aggtagttgattgataacctcaatgacatgatttattttagataaggtagttaattttatgtttcatgacagacgcgaagaagatcagaagaacaaagaa |
116 |
Q |
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| T |
47527724 |
aggtagttgattgataacctcaatgacatgatttattttagataaggtagttaattttatgtttcatgacagacgcgaagaagatcagaagaacaaagaa |
47527823 |
T |
|
| Q |
117 |
gcagaaagttaccagaaatcccaaacaagttgacccacaactcgccctctccatcgagaatttgcaaaaaatccaagacgacctcgcagaggtactcttt |
216 |
Q |
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| T |
47527824 |
gcagaaagttaccagaaatcccaaacaagttgacccacaactcgccctctccatcgagaatttgcaaaaaatccaagacgaccttgcagaggtactcttt |
47527923 |
T |
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| Q |
217 |
tttctcatttattcattcaactgaagctattaacttacacaatgttttgattcccaaattaccttaacctgtgttataaaccatgactttaatcctcgag |
316 |
Q |
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| T |
47527924 |
tttctcatttattcattcaactgaagctattaacttacacaatgttttgatccccaaattaccttaacctgtgttataaaccatgactttaatcctcgag |
47528023 |
T |
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| Q |
317 |
tgaggatttgctatttcattgttgttttgattatgaatttgtgagttgttgtgtagctcaatgacaaaaaatatgatcagctacgtgaaattgagcagaa |
416 |
Q |
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| T |
47528024 |
tgaggatttgctatttcattgttgttttgattatgaatttgtgagttgttgtgtagctcaatgacaaaaaatatgatcagctacgtgaaattgagcagaa |
47528123 |
T |
|
| Q |
417 |
gttaaatgagactatagatcccgtttacattaagcgggatgagatgatcaaatctattcctaacttctggttgaatgctgtgggtattttctatctacat |
516 |
Q |
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| T |
47528124 |
gttaaatgagactatagatcccgtttacattaagcgggatgagatgatcaaatctattcctaacttctggttgaatgctgtgagtattttctatctacat |
47528223 |
T |
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| Q |
517 |
gttttccctttgct |
530 |
Q |
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| T |
47528224 |
gttttccctttgct |
47528237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 44983980 - 44983877
Alignment:
| Q |
403 |
gaaattgagcagaagttaaatgagactatagatcccgtttacattaagcgggatgagatgatcaaatctattcctaacttctggttgaatgctgtgggta |
502 |
Q |
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|||||||||||||||| ||||||| || | || |||||| ||||||| | ||||| ||||||||||||||| | |||||||||||||||||| ||| |
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| T |
44983980 |
gaaattgagcagaagtataatgagattaggaagccggtttacgataagcggaacgagattatcaaatctattcctgatttctggttgaatgctgtgagta |
44983881 |
T |
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| Q |
503 |
tttt |
506 |
Q |
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|||| |
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| T |
44983880 |
tttt |
44983877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 44984261 - 44984156
Alignment:
| Q |
106 |
agaacaaagaagcagaaagttaccagaaatcccaaacaagttgacccacaactcgccctctccatcgagaatttgcaaaaaatccaagacgacctcgcag |
205 |
Q |
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||||| |||||||||||| | ||| ||||||| || |||||||| | ||||| ||||||||||||||| |||||| | |||||||| ||||||| | |
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| T |
44984261 |
agaaccaagaagcagaaactcaccgaaaatcccgaagaagttgacgctgaactcatcctctccatcgagaaattgcaagagatccaagatgacctcgaaa |
44984162 |
T |
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| Q |
206 |
aggtac |
211 |
Q |
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|||||| |
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| T |
44984161 |
aggtac |
44984156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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