View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4477_high_9 (Length: 240)
Name: NF4477_high_9
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4477_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27987481 - 27987281
Alignment:
| Q |
1 |
tatactaggatccccacttacatgtacattttgacatctttagccgataatgttaggctaaacaccttcattagagtttgaacccaaggcctcacagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27987481 |
tatactaggatccccacttacatgtacattttgacatctttagccgataatgttaggctaaacaccttcattagagtttgaacccaaggcctcacagttg |
27987382 |
T |
|
| Q |
101 |
tgtgtgagttttaatggtgtttgatacttcatatacagatnnnnnnnnnntagaaaaccaatgcttctaccatagtatcgcaagctcaggaacaatactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27987381 |
tgtgtgagttttaatggtgtttgatacttcatatacagat-aaaaaaaaatagaaaaccaatgcttctaccatagtatcgcaagctcaggaacaatactc |
27987283 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
|
|| |
|
|
| T |
27987282 |
ac |
27987281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 27997236 - 27997100
Alignment:
| Q |
4 |
actaggatccccacttacatgtacattttgacatctttagccgataatgttaggctaaacaccttcattagagtttgaacccaaggcctcacagttgtgt |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||| ||||||||| | || | ||||||| |
|
|
| T |
27997236 |
actaggatccccacttacaagtacattttgacatcttttgccgataatgttaggctgaacactttcattcgagttcgaacccaagtcttcgctgttgtgt |
27997137 |
T |
|
| Q |
104 |
gtgagttttaatggtgtttgatacttcatatacagat |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
27997136 |
gtgagttttaatggtgtttgtcacttcatctacagat |
27997100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 39303371 - 39303410
Alignment:
| Q |
76 |
gtttgaacccaaggcctcacagttgtgtgtgagttttaat |
115 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
39303371 |
gtttgaacccgagacctcacagttgtgtgtgagttttaat |
39303410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University