View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4477_low_13 (Length: 205)

Name: NF4477_low_13
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4477_low_13
NF4477_low_13
[»] chr4 (24 HSPs)
chr4 (11-205)||(1548453-1548647)
chr4 (31-204)||(1552797-1552973)
chr4 (128-205)||(1524515-1524592)
chr4 (130-205)||(558493-558568)
chr4 (119-205)||(546897-546983)
chr4 (119-205)||(8187120-8187206)
chr4 (131-205)||(55908757-55908831)
chr4 (128-204)||(1508033-1508109)
chr4 (128-204)||(1513437-1513513)
chr4 (83-201)||(3438599-3438716)
chr4 (128-205)||(553472-553549)
chr4 (128-204)||(12121487-12121563)
chr4 (130-205)||(8184059-8184134)
chr4 (119-205)||(640899-640985)
chr4 (30-179)||(566084-566233)
chr4 (161-205)||(12116604-12116648)
chr4 (121-205)||(55505137-55505221)
chr4 (132-205)||(532186-532259)
chr4 (150-205)||(659726-659779)
chr4 (149-205)||(1519171-1519227)
chr4 (128-204)||(1537797-1537873)
chr4 (119-205)||(570335-570421)
chr4 (119-201)||(7307844-7307926)
chr4 (66-160)||(53761844-53761937)
[»] chr8 (7 HSPs)
chr8 (31-205)||(27922404-27922578)
chr8 (128-205)||(18315302-18315379)
chr8 (128-205)||(32151294-32151371)
chr8 (128-205)||(34936192-34936269)
chr8 (83-205)||(17628043-17628165)
chr8 (130-170)||(44736530-44736570)
chr8 (123-205)||(17636430-17636512)
[»] chr5 (6 HSPs)
chr5 (41-201)||(32267381-32267541)
chr5 (128-205)||(37937880-37937957)
chr5 (28-205)||(41901564-41901741)
chr5 (130-205)||(38267585-38267660)
chr5 (83-205)||(41889583-41889705)
chr5 (128-205)||(20478111-20478188)
[»] chr3 (4 HSPs)
chr3 (18-197)||(51113818-51113997)
chr3 (123-205)||(51120922-51121004)
chr3 (83-205)||(13470761-13470883)
chr3 (83-179)||(51764495-51764591)
[»] chr6 (20 HSPs)
chr6 (83-201)||(6585270-6585388)
chr6 (39-205)||(6394768-6394934)
chr6 (130-204)||(6402855-6402929)
chr6 (128-205)||(6432154-6432231)
chr6 (141-205)||(28935055-28935119)
chr6 (130-205)||(6603231-6603306)
chr6 (39-205)||(14818287-14818452)
chr6 (128-205)||(6409999-6410076)
chr6 (130-205)||(7119152-7119227)
chr6 (130-205)||(7131630-7131705)
chr6 (119-205)||(9411339-9411425)
chr6 (130-204)||(14802331-14802405)
chr6 (128-205)||(6415959-6416036)
chr6 (128-205)||(6423210-6423287)
chr6 (83-160)||(19632387-19632464)
chr6 (41-205)||(7994211-7994375)
chr6 (130-205)||(10579765-10579840)
chr6 (39-205)||(14820597-14820763)
chr6 (128-205)||(11936304-11936381)
chr6 (128-205)||(11948284-11948361)
[»] chr2 (3 HSPs)
chr2 (128-205)||(45245114-45245191)
chr2 (131-205)||(1037693-1037767)
chr2 (130-205)||(32785801-32785876)
[»] chr1 (6 HSPs)
chr1 (40-201)||(7554393-7554554)
chr1 (136-205)||(52082582-52082651)
chr1 (128-205)||(9586632-9586709)
chr1 (49-205)||(19468528-19468684)
chr1 (119-202)||(43634891-43634974)
chr1 (83-201)||(29718956-29719074)
[»] scaffold0295 (1 HSPs)
scaffold0295 (134-205)||(653-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (127-205)||(39176-39254)
[»] scaffold0014 (1 HSPs)
scaffold0014 (118-174)||(88822-88878)
[»] chr7 (2 HSPs)
chr7 (128-205)||(10614586-10614663)
chr7 (128-205)||(15092180-15092257)
[»] scaffold0807 (1 HSPs)
scaffold0807 (142-178)||(1523-1559)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 8e-97; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 1548647 - 1548453
Alignment:
Q  11 acatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  1548647 acatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtgatatttttac 1548548  T
Q  111 aacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548547 aacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 1548453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 1552973 - 1552797
Alignment:
Q  31 acaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttt---tacaacgttttagtaacaag 127  Q
    |||||||| |||||| || ||||| |||||| || | |||||| | | ||| |||||||||||||| |||| ||  |   ||||  ||| ||||||||      
T  1552973 acaacctttcaaattgatctctcttagttgcaagcaattttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagc 1552874  T
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 204  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  1552873 tgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacac 1552797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 1524592 - 1524515
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||| |||||||||    
T  1524592 tgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacc 1524515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 558493 - 558568
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||   ||||||||||||||||    
T  558493 caaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacc 558568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 546897 - 546983
Alignment:
Q  119 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||  | | ||||| |||||||||||| ||||    
T  546897 agtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacc 546983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 8187206 - 8187120
Alignment:
Q  119 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||| ||||||||||||| |||||||||||| ||  |||  ||||||| ||||||||  ||||||||||||||||||||||||    
T  8187206 agtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacc 8187120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 55908831 - 55908757
Alignment:
Q  131 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||| |||| |||||||||||| || ||||||||||||||||| || ||||||||||||||| ||||||    
T  55908831 aaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacc 55908757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 1508109 - 1508033
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 204  Q
    ||||||||||||||||||| ||||||||| |||   |||||||||||||||| | | ||||||||||||||||||||    
T  1508109 tgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 1513513 - 1513437
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 204  Q
    ||||||||||||||||||| ||||||||| || | ||||||||||||||||| | |||||  |||||||||||||||    
T  1513513 tgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacac 1513437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 3438716 - 3438599
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 182  Q
    |||||||||||| |||||| |  |||||||  ||  |||||||  ||||||||||||| ||||||||||||||| |||| |||| ||| ||||||||  |    
T  3438716 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtattt-atcatcaactc 3438618  T
Q  183 ttgtatgtgacaagttcaa 201  Q
    |||||||||||||| ||||    
T  3438617 ttgtatgtgacaagctcaa 3438599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 553472 - 553549
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||  |||||||||||| |||||||| |||| |||||||||||  ||||||  ||||||||||||||||    
T  553472 tgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacc 553549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 12121563 - 12121487
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 204  Q
    |||||||||||||| |||| ||||||||| ||   ||||||||||||||||| | |||||| |||||||||||||||    
T  12121563 tgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacac 12121487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 8184134 - 8184059
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||| |||||||||||||||  ||| ||||| |  ||||||||  ||||||||||||||||||||||||    
T  8184134 caaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacc 8184059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 640899 - 640985
Alignment:
Q  119 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||  |||||||| ||||| ||| |||||||| |||| | |||||||||||||||||   |||||| ||||||||||||||||    
T  640899 agtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacc 640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 566084 - 566233
Alignment:
Q  30 aacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtg 129  Q
    ||||||| ||||| || |||||||||||||| | | |||||||  | |  || ||||||||||||||||| | ||||| |  |  ||  ||| |||  ||    
T  566084 aacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatattgcagtgacagctg 566183  T
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaa 179  Q
    |||||||||||||||   |||||||||||||| |||||||||||||||||    
T  566184 caaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaa 566233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 12116648 - 12116604
Alignment:
Q  161 ttgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  12116648 ttgagtgattcatcatcaacacttgtatgtgacaagttcaacacc 12116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 55505221 - 55505137
Alignment:
Q  121 taacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||| |||||||| ||||||||| |||||||| ||||||  |||||| |||| ||||   |||||| ||||||||||||||||    
T  55505221 taacaaatgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacc 55505137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 532186 - 532259
Alignment:
Q  132 aaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||| |||||||| |||||||| ||||||  ||  |||||||||||||  |||||| ||||||||||||||||    
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacc 532259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 659726 - 659779
Alignment:
Q  150 ttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||  |||||||||| || || |||||||||||||||||||||||||    
T  659726 ttgagatcacat--agtgtttcattattaacacttgtatgtgacaagttcaacacc 659779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 1519227 - 1519171
Alignment:
Q  149 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| ||||| ||  |||||||  ||||||||||||||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacc 1519171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 1537873 - 1537797
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 204  Q
    ||||||||||||||||||| ||||||||| |||   |||||||  |||| || | |||||| |||||||||||||||    
T  1537873 tgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacac 1537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 570335 - 570421
Alignment:
Q  119 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||  ||||||||||| |||||||||||||| |||| || ||||  ||| | |||||  | ||||| ||||||||||||||||    
T  570335 agtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacc 570421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 7307844 - 7307926
Alignment:
Q  119 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 201  Q
    ||||||| ||||||||||| || ||||||||||||||||| |   |||| |||||||||||    ||||| ||||||||||||    
T  7307844 agtaacaggtgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaa 7307926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 53761937 - 53761844
Alignment:
Q  66 agttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcaca 160  Q
    |||||||||| | ||| ||||||||||| || |||| ||| | |||| |||| ||||| |  |||||||||||||||||| |||| |||||||||    
T  53761937 agttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaatat-tgcaaaagcccacgacaattcttcgagatcaca 53761844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 27922404 - 27922578
Alignment:
Q  31 acaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgc 130  Q
    |||||| |||||| |||| | ||||||||| | | |||||||| | | ||||||||||||||||| ||||| ||  ||||||  ||  ||| |||| | |    
T  27922404 acaaccatccaaactaatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttc 27922503  T
Q  131 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||| ||||||||||||||||| ||  |||| ||||||||||| | |||||| ||||||||||||||||    
T  27922504 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacc 27922578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 18315379 - 18315302
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||||||||||||    
T  18315379 tgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacc 18315302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 32151294 - 32151371
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||  ||||||||| ||||||    
T  32151294 tgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacc 32151371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 34936269 - 34936192
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||||||||||||||| |||  ||| |||||||| ||||||||  ||||||| |||||||| |||||||    
T  34936269 tgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacc 34936192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 17628165 - 17628043
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 182  Q
    ||||||||||| ||||||| |  |||||||  || |||||| |  | ||| ||||||  |||| ||||||||||||||  ||||| || ||||||||  |    
T  17628165 ttcactcccttgtctgtgacacctttacaaaattctagtaatagtttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactc 17628066  T
Q  183 ttgtatgtgacaagttcaacacc 205  Q
    | |||||||||||||||||||||    
T  17628065 tagtatgtgacaagttcaacacc 17628043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 44736530 - 44736570
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgttt 170  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  44736530 caaaagcccacaacaactctttgagatcacaatgagtgttt 44736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 17636512 - 17636430
Alignment:
Q  123 acaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||| |||||||| | | |||||||||||||||||||||  | || |||||| ||||  | ||| ||||||||||||||||||    
T  17636512 acaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacc 17636430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 32267381 - 32267541
Alignment:
Q  41 aaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccac 140  Q
    |||||||| | ||| ||||||| | |||||||| ||| ||| ||||||||||||| ||||||||  ||||||  ||| ||| |||| | |||||||||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccac 32267480  T
Q  141 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 201  Q
     ||||||||||||||||| ||  |||| |||||||||||   |||| ||||||||||||||    
T  32267481 aacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaa 32267541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 37937880 - 37937957
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||||||||||  |||||||||| |||| |||||||| ||||||||| |||||||||| ||||| |||||||    
T  37937880 tgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacc 37937957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 41901741 - 41901564
Alignment:
Q  28 aaaacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaag 127  Q
    ||||||||| | |||| |||| | ||||| |||||   |||||||| | | ||| ||||||||||||| ||||| ||  ||||||  ||  ||| ||||     
T  41901741 aaaacaaccattcaaactaatctttctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaat 41901642  T
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    | |||||| |||| ||||||||||||||||| ||  |||| |||||||||||   |||||| ||||||||||||||||    
T  41901641 ttcaaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacc 41901564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 38267660 - 38267585
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||||| ||  |||||||||| |||| |||||| ||||||||||  |||||||||| ||||| |||||||    
T  38267660 caaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacc 38267585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 41889705 - 41889583
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 182  Q
    ||||||||||||| ||||| ||  | ||||  ||| |||||||| | | ||||||| | ||||||||||||||||  ||  ||||||||||||||||       
T  41889705 ttcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaactt 41889606  T
Q  183 ttgtatgtgacaagttcaacacc 205  Q
    |||||| ||| ||||||||||||    
T  41889605 ttgtatatgataagttcaacacc 41889583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 20478188 - 20478111
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| |||| || |||||||||||   | |||||| ||||||| | |||||| ||||||||||||||||    
T  20478188 tgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacc 20478111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 51113997 - 51113818
Alignment:
Q  18 catgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttt 117  Q
    |||||| || ||||||||| |  |||||||| ||||| ||||  | | | |||||| | | ||| ||||||||||||||||||| ||  | ||||  |||    
T  51113997 catgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaattttt 51113898  T
Q  118 tagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagt 197  Q
     |||||||  ||||||||||||| ||||||||| |||||||||| |||||||||||||||||   |||||| ||||||||    
T  51113897 cagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagt 51113818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 51121004 - 51120922
Alignment:
Q  123 acaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||| ||||||||||||||||||||||||||||| ||||  ||| ||||||||||||  |||||||| |||||||||||||||    
T  51121004 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacc 51120922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 13470883 - 13470761
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 182  Q
    ||||||||||  ||||||| ||| | |||| |||  ||||| |  ||||||||||||| |||| |||||||||||| || |||||||| ||||| ||       
T  13470883 ttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacct 13470784  T
Q  183 ttgtatgtgacaagttcaacacc 205  Q
    |||||| ||||||||||||||||    
T  13470783 ttgtatttgacaagttcaacacc 13470761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 51764591 - 51764495
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaa 179  Q
    ||||||||||||||  ||| ||| | |||| |||  ||||| |  ||||||||||| | |||| ||||||||||| ||| |||||||| ||||||||    
T  51764591 ttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaa 51764495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 6585388 - 6585270
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 182  Q
    |||| |||||||||||||| ||||| ||||| ||| ||||| |  | ||||||| ||  |||||||||||||||||||| |||||||||||||||||       
T  6585388 ttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacct 6585289  T
Q  183 ttgtatgtgacaagttcaa 201  Q
    |||||| ||||||||||||    
T  6585288 ttgtatctgacaagttcaa 6585270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 6394768 - 6394934
Alignment:
Q  39 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 138  Q
    |||||||||| ||||||| ||| | | |||||||| | | ||| | ||| ||||| ||||||| ||||||||||   |  |||   || |||||||||||    
T  6394768 ccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagccc 6394867  T
Q  139 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    || |||| ||||||||||||||   || |||||||||||||  ||||||| ||||||||||||||||    
T  6394868 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacc 6394934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 6402855 - 6402929
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 204  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||||||   | |||| |||||||||||||||    
T  6402855 caaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacac 6402929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 6432154 - 6432231
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||| |||||||| |||| ||||| |||||||||  ||||||||||||||||  ||||||| ||||||||||||||||    
T  6432154 tgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacacc 6432231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 28935055 - 28935119
Alignment:
Q  141 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| |||||| |||||| |||||| ||||  ||||||||||||||||||||||||    
T  28935055 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacc 28935119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 6603306 - 6603231
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||| ||||||||||||||||| ||| || |||||||||||||| || ||||| || ||||| |||||||    
T  6603306 caaaagcccaggacaactctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacc 6603231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 14818287 - 14818452
Alignment:
Q  39 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 138  Q
    ||||||||||| ||||||| || | | |||||||| ||| ||| ||||| ||||||||||||| ||| ||||||  ||  ||||| ||  ||||||||||    
T  14818287 ccaaattaatt-ctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagccc 14818385  T
Q  139 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |  |||| |||| ||||||| ||  |||||||||| |||||   |||||| ||| ||||||||||||    
T  14818386 agaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacc 14818452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 6409999 - 6410076
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||| || |||| |||||||||||||||  || |||||||||||||  ||||||| |||| |||||||||||    
T  6409999 tgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacacc 6410076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 7119152 - 7119227
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||| | |||| |||| |||||||||| |||||||||||||||||   | |||| ||||||||||||||||    
T  7119152 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacc 7119227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 7131630 - 7131705
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||| | |||| |||| |||||||||| |||||||||||||||||   | |||| ||||||||||||||||    
T  7131630 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacc 7131705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 9411339 - 9411425
Alignment:
Q  119 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||  |||||||| ||||||||| ||||||||||| ||| |||| |||||||   || || ||||| ||||||||||||||||    
T  9411339 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacc 9411425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 14802331 - 14802405
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 204  Q
    |||||| |||| |||| ||||||| ||||||| |||||||||||||||||   |||||| |||||| ||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacac 14802405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 6415959 - 6416036
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||| | |||| ||||||||||||||| ||| |||| ||||| ||   |||||| ||||||||||||||||    
T  6415959 tgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacc 6416036  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 6423210 - 6423287
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||| ||||| |||||||||||||||| ||| |||||||| |||   ||  ||||||| ||||||||||||||||    
T  6423210 tgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacc 6423287  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 19632387 - 19632464
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcaca 160  Q
    |||||||||||||||||||||||   ||||  ||| ||||| |  ||||||||||||| |||| ||||||||||||||    
T  19632387 ttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcaca 19632464  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 7994375 - 7994211
Alignment:
Q  41 aaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccac 140  Q
    |||| ||| ||| ||||||||| | |||||||| | | ||| |||||||||| ||| || | ||  |||||| |||  ||||| |  |||||||| |||     
T  7994375 aaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccag 7994276  T
Q  141 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
     |||| |||||||||||||||  |||||||| |||| ||  ||||||| ||||| ||||||||||    
T  7994275 aacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacc 7994211  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 10579840 - 10579765
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||| || |||| |||||||||||  || |||||||| ||||||||   |||||| ||||||||||||||||    
T  10579840 caaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacc 10579765  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 14820597 - 14820763
Alignment:
Q  39 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 138  Q
    |||||||||| |||||||| || | | |||||| | | | ||| ||||| ||||||||||||| ||  |||||   ||  ||||| ||  ||||||||||    
T  14820597 ccaaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccc 14820696  T
Q  139 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    || |||| |||| ||||||| ||  |||||||||| |||||   |||||| ||| ||||||||||||    
T  14820697 acaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacc 14820763  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 11936381 - 11936304
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| ||||||||||||||||  || ||||| || ||| ||||  ||||||  |||||||| |||||||    
T  11936381 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacc 11936304  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 11948361 - 11948284
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| ||||||||||||||||  || ||||| || ||| ||||  ||||||  |||||||| |||||||    
T  11948361 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacc 11948284  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 45245191 - 45245114
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||| | |||||| |||||||||    
T  45245191 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacc 45245114  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 1037767 - 1037693
Alignment:
Q  131 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||| |||| |||||||||||| || ||||||||||||||||| || ||||||||||||||| ||||||    
T  1037767 aaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacc 1037693  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 32785876 - 32785801
Alignment:
Q  130 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||| || ||||  ||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||    
T  32785876 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 32785801  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 7554393 - 7554554
Alignment:
Q  40 caaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccca 139  Q
    ||||||||| ||| | ||| ||| | |||||||| | | ||| ||||||||||| ||||||| ||| | ||| | ||| |||||||  || ||||| |||    
T  7554393 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcca 7554492  T
Q  140 cgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 201  Q
    | ||||||||||||||||| || ||||| ||||||||||| |||||||| ||| ||||||||    
T  7554493 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 52082582 - 52082651
Alignment:
Q  136 cccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||| ||||||||||||||||||||  | |||||||||||||||  |||| | ||||||||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacc 52082651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 9586632 - 9586709
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||| ||||||||| || ||||| ||||||  ||||||||||||| || |  ||||| ||||||||||||||||    
T  9586632 tgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacc 9586709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 19468684 - 19468528
Alignment:
Q  49 ttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactc 148  Q
    |||||||||||| ||| | |||||||  | ||| |||||||| |||||||||| ||  |||||||  |  |  || || | |||||| |||| |||  ||    
T  19468684 ttctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccacaacagttc 19468585  T
Q  149 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||||||  ||||||||||||||||   |||||| |||||| |||||||||    
T  19468584 tttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacc 19468528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 43634891 - 43634974
Alignment:
Q  119 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaac 202  Q
    |||||||| | |||||| ||||||||| |||||||| ||||||  |||||| |||| ||||   |||||| |||||||||||||    
T  43634891 agtaacaaattcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaac 43634974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 29719074 - 29718956
Alignment:
Q  83 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 182  Q
    |||||||| |||||||||| |||  |||||| ||  |||||||| |||||||| |||| ||||||| |||| || | || ||||| || ||||||||       
T  29719074 ttcactccattctctgtgacattcatacaactttccagtaacaattgcaaaaggccacaacaactcgttgatatgatatggagtgatttatcatcaacgt 29718975  T
Q  183 ttgtatgtgacaagttcaa 201  Q
    | |||| ||||||||||||    
T  29718974 tggtatatgacaagttcaa 29718956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 724 - 653
Alignment:
Q  134 agcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||| |||| |||| ||||||| || ||||||||||||||| | |||||||||||||||||| ||||||    
T  724 agcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacc 653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 39176 - 39254
Alignment:
Q  127 gtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||| ||   |||||  || |||||||||||||    
T  39176 gtgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacc 39254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 88822 - 88878
Alignment:
Q  118 tagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatc 174  Q
    |||| |||| |||||||||||| |||| |||||||||||||||| ||||| ||||||    
T  88822 tagttacaattgcaaaagcccatgacacctctttgagatcacatggagtgcttcatc 88878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 10614586 - 10614663
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| |||  |||| |||||||||| |||||||| ||||| ||   | |||| ||||||||||||||||    
T  10614586 tgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacc 10614663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 15092257 - 15092180
Alignment:
Q  128 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 205  Q
    ||||||||||||| |||| ||||||||||| ||| |||||||| ||||| ||   |||| | |||||| |||||||||    
T  15092257 tgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacc 15092180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 1559 - 1523
Alignment:
Q  142 acaactctttgagatcacattgagtgtttcatcatca 178  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  1559 acaattctttgagatcacatagagtgtttcatcatca 1523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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