View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4477_low_2 (Length: 496)
Name: NF4477_low_2
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4477_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 118 - 483
Target Start/End: Original strand, 11343912 - 11344279
Alignment:
| Q |
118 |
ttcttctctaccgtcaaatcttctctttcatcttccattcttgacccattttccttctctttattgtgatatcccattaaaatcatttttagctgtcatt |
217 |
Q |
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| T |
11343912 |
ttcttctctgcagtcaaatcttctctttcatcttccattcttgacccattttccttctctttattgtgatatcccattaaaatcatttttagctgtcatt |
11344011 |
T |
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| Q |
218 |
gattgtattgcattattgttcaagttgctgttaaagttannnnnnnnnn--agaaggatcaatcaaaggaacaagatccatcatcaaagctaacataaaa |
315 |
Q |
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| T |
11344012 |
gattgtattgcattattgttcaagttgctgttaaagttaatttttttttttagaaggatcaattaaaggaacaagatccatcatcaaagctaacataaaa |
11344111 |
T |
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| Q |
316 |
acagtgttaacgatggcacaatgtgtaagcatatcgcaagaacaacaacaagaatgttgacgttgaacagcaataaggcaaagtcgaatcagttgaaaaa |
415 |
Q |
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| T |
11344112 |
acagtgttaacgatggcacaatgtgtaagcatatcgcaagaacaacaacaagaatgttgacgttgaacagcaataaggcaaagccgaatcagttgaaaaa |
11344211 |
T |
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| Q |
416 |
ctagaccggccggcaggtcgaaccggatccggttcaccggttttttcggttatcacaggttctgctga |
483 |
Q |
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| T |
11344212 |
ctagaccggccggcaggtcaaatcggaaccggttcaccggtttttttggttttcaccggttctgctga |
11344279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11343849 - 11343897
Alignment:
| Q |
1 |
ggaaccattgggataattaacagaattcttgtgatattgtgacgttatt |
49 |
Q |
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| T |
11343849 |
ggaaccatttgaataatgagcagaattcttgtgatattttgacgttatt |
11343897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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