View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4477_low_3 (Length: 448)
Name: NF4477_low_3
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4477_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 418
Target Start/End: Original strand, 37780521 - 37780906
Alignment:
| Q |
12 |
agagacaaattaacatgagatgtgtgcattagattaactactagaccaaaatggttctggcnnnnnnnngttatgaaggaagaagaaaccaaagattact |
111 |
Q |
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| T |
37780521 |
agagacaaattaacatgagatgcgtgcattagattaactactaaaccaaaatggttctgccttttttttgttatgaaggaagaagaaaccaaagattact |
37780620 |
T |
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| Q |
112 |
tggaaggttctttatatgacatttctttgtggattgtttgggtatgctactgaattgttcacctttttcttccatatagtattttcggtcatataaagag |
211 |
Q |
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| T |
37780621 |
tggaaggttctttatatgacatttctttgtggattgtttgggtatgctactgaattgttcacctttttcttccattta-----------------aagag |
37780703 |
T |
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| Q |
212 |
cctttatatgacattaattaaagatactaatatggtcaatgtatgttccaggggaagtttacttctaaacctttatggcatgggactgacttttatttca |
311 |
Q |
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| T |
37780704 |
tctttatatgacatta----aagatactaatatggtcaatgtatgttccaggggaagtttacttctaaacctttatggcatgggactgacttttatttca |
37780799 |
T |
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| Q |
312 |
gcaacgtttatgatgtcgttgtataaccttattccaggagttacctttatcatggccatatccttcgggtactcacacttttcactttagaataatttag |
411 |
Q |
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| T |
37780800 |
gcaacgtttatgatgtcattgtacaaccttattccaggagttaccttcatcatggccatatccttcgggtactcactcttttcactttagaataatttag |
37780899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 224 - 373
Target Start/End: Original strand, 37807470 - 37807619
Alignment:
| Q |
224 |
attaattaaagatactaatatggtcaatgta-tgttccaggggaagtttacttctaaacctttatggcatgggactgacttttatttcagcaacgtttat |
322 |
Q |
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| T |
37807470 |
attaattaaagatactaatatggtta-tgtaatgttgcaggggaagtttatttctaaacctttatggcgttgccctcgatttgacttcagcaacgtttat |
37807568 |
T |
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| Q |
323 |
gatgtcgttgtataaccttattccaggagttacctttatcatggccatatc |
373 |
Q |
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| T |
37807569 |
gttgtccatgtccaaccttattccaggaattaccttcatcatggccatatc |
37807619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 37807342 - 37807404
Alignment:
| Q |
99 |
accaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtatgctac |
161 |
Q |
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| T |
37807342 |
accaaagattacttggaaggttctttttctttcatttctatgtggattgtttgggtacgctac |
37807404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 37788905 - 37788982
Alignment:
| Q |
81 |
gttatgaaggaagaagaaaccaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtatgc |
158 |
Q |
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| T |
37788905 |
gttatgcaggaaggaaagaccaaagattactcggaatgtgctttctctggcatttctatgcggattgtttgggtatgc |
37788982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 37797152 - 37797209
Alignment:
| Q |
99 |
accaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtat |
156 |
Q |
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| T |
37797152 |
accaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggtat |
37797209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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