View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4477_low_4 (Length: 422)
Name: NF4477_low_4
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4477_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 5367053 - 5366640
Alignment:
| Q |
1 |
gggatggtacttccattttattttagtgggatccttggttggaaggagtagcttt-aaagatagattaagcctcctgtttgagcttgttgataataagat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5367053 |
gggatggtacttccattttattttagtgggatccttggttggaaggaatagcattgaaagatagattcagcctcctgtttgagcttgttgataataagat |
5366954 |
T |
|
| Q |
100 |
gactacggtggctgagatggagcttctagggtgggtgagggtggtgaggtttgaaagtggcataagaggttatgggcgtgggtggaggagcagttgaggg |
199 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5366953 |
gactacggtggctaagatggagcttctagggtgggtgagggtggtgaggtttgaaagtggcataagaggttatgggcgtggatggaggagcagttgaggg |
5366854 |
T |
|
| Q |
200 |
agtgtagtgatatgttgaactctattattttgcacaagaatgttcatgaaaagtggaggtggaatttgtgttcttnnnnnnnttacacgtttaagagtgc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
5366853 |
agtgtagtgatatgttgaactctattattttgcagaagaatgttcatgacaggtggaggtggaatttgtgttcttcaaaaaattacacgtttaacagtgc |
5366754 |
T |
|
| Q |
300 |
ttataannnnnnncaacaatcatcaactgaacataacattgaagtcgacaatctagtattttggcataaagatgtccctctcatagtttatctttttgtg |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
5366753 |
ttataatttttttcaacaatcatcaactgaacataacattgaagtcgacaatctagtattttggcataaagatat--ctctcatagtttatctttttgtg |
5366656 |
T |
|
| Q |
400 |
tagtgtcttcatctca |
415 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
5366655 |
tggtgtcttcttctca |
5366640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 88 - 274
Target Start/End: Complemental strand, 18748299 - 18748113
Alignment:
| Q |
88 |
tgataataagatgactacggtggctgagatggagcttctagggtgggtgagggtggtgaggtttgaaagtggcataagaggttatgggcgtgggtggagg |
187 |
Q |
| |
|
||||||||||||| |||| ||||||||||| | ||| |||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
18748299 |
tgataataagatggctacattggctgagatgaaacttttagggtgggtgagggtggagaggcttgaatgtggcacaagaggttatgggcgtgggaggagg |
18748200 |
T |
|
| Q |
188 |
agcagttgagggagtgtagtgatatgttgaactctattattttgcacaagaatgttcatgaaaagtggaggtggaatttgtgttctt |
274 |
Q |
| |
|
|| || |||||||| |||| |||||||||||| ||||||||||||| | ||||| |||| | ||||||||| | ||||| ||||| |
|
|
| T |
18748199 |
agtagctgagggagagtagcgatatgttgaacactattattttgcaggatgatgttaatgacaggtggaggtgaattttgtattctt |
18748113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 46173908 - 46174139
Alignment:
| Q |
3 |
gatggtacttccattttattttagtgggatccttggttggaaggagtagcttt-aaagatagattaagcctcctgtttgagcttgttgataataagatga |
101 |
Q |
| |
|
||||||| || | ||||||||| ||||||||||||||||||||| ||||||| |||||||| || | | || ||| ||||| |||||| |||||| |
|
|
| T |
46173908 |
gatggtaatttctttttattttgatgggatccttggttggaaggaatagctttgaaagataggttcaatcgtcttttttagctttctgataacaagatgg |
46174007 |
T |
|
| Q |
102 |
ctacggtggctgagatggagcttctagggtgggtg--agggtggtgaggtttgaaagtggcataagaggttatgggcgtgggtggaggagcagttgaggg |
199 |
Q |
| |
|
| |||||||| | ||| ||||| || |||||| | |||||||||||| ||| ||||||| | ||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
46174008 |
atgcggtggctaatatgaagcttttaaggtgggggtaagggtggtgaggcttggaagtggcgcatgaggttatgggcgtgggagga-gagcggttgaggg |
46174106 |
T |
|
| Q |
200 |
agtgtagtgatatgttgaactctattattttgc |
232 |
Q |
| |
|
|||||| |||| ||||||||| | ||||||||| |
|
|
| T |
46174107 |
agtgtaatgatttgttgaactttgttattttgc |
46174139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 18429401 - 18429531
Alignment:
| Q |
103 |
tacggtggctgagatggagcttctagggtgggtgagggtggtgaggtttgaaagtggcataagaggttatgggcgtgggtggaggagcagttgagggagt |
202 |
Q |
| |
|
|||||||||||||||||||| | || | ||||||||||||| |||| ||| ||||| | || | |||||| | | |||| ||||||||| |||| ||| |
|
|
| T |
18429401 |
tacggtggctgagatggagcatttatgatgggtgagggtggagagggttggaagtgacgtaggtggttatagacttgggaggaggagcaactgagaaagt |
18429500 |
T |
|
| Q |
203 |
gtagtgatatgttgaactctattattttgca |
233 |
Q |
| |
|
|||||| | ||||||||| |||||||||||| |
|
|
| T |
18429501 |
gtagtgctctgttgaactttattattttgca |
18429531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 45091668 - 45091772
Alignment:
| Q |
19 |
tattttagtgggatccttggttggaaggagtagcttt-aaagatagattaagcctcctgtttgagcttgttgataataagatgactacggtggctgagat |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||| ||| |||| || |||| ||| ||||||||| |||||| |||||||| ||| ||||||| || |
|
|
| T |
45091668 |
tattttagtgggatccttggatggaaggggtgactttgaaatataggttcagccgcctttttgagctttctgataacaagatgacaacgatggctgaaat |
45091767 |
T |
|
| Q |
118 |
ggagc |
122 |
Q |
| |
|
||||| |
|
|
| T |
45091768 |
ggagc |
45091772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 27000540 - 27000568
Alignment:
| Q |
17 |
tttattttagtgggatccttggttggaag |
45 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27000540 |
tttattttagtgggatccttggttggaag |
27000568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 133551 - 133758
Alignment:
| Q |
3 |
gatggtacttccattttattttagtgggatccttggttggaaggagtagcttt-aaagatagattaagcctcctgtttgagcttgttgataataagatga |
101 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||||| | |||| || || ||||| |||||||| || ||| ||| ||||||||| || ||| ||||||| |
|
|
| T |
133551 |
gatggtaactcctttttattttggtgggatccttagatggagggtgtggctttgaaagataggttcagctgcctctttgagcttttttatagtaagatgg |
133650 |
T |
|
| Q |
102 |
ctacggtggctgagatggagcttctagggtg-ggtgagggtggtgaggtttgaaagtggcataagaggttatgggcgtgggtggaggagcagttgaggga |
200 |
Q |
| |
|
|||| | |||| ||||||| ||||||| |||||| |||| |||| || |||||||||| | ||| |||| |||| |||||||||||||||||| |
|
|
| T |
133651 |
ctacaacgactgaaatggagcacttagggtgaggtgagagtggagaggcttagaagtggcataggcccttacgggcctgggaggaggagcagttgaggga |
133750 |
T |
|
| Q |
201 |
gtgtagtg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
133751 |
gtgtagtg |
133758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 24448881 - 24448780
Alignment:
| Q |
132 |
gggtgagggtggtgaggtttgaaagtggcataagaggttatgggcgtgggtggaggagcagttgagggagtgtagtgatatgttgaactctattattttg |
231 |
Q |
| |
|
||||||||| ||||||| |||||||||| || ||| |||||||| | |||||||| ||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
24448881 |
gggtgagggaggtgaggcttgaaagtggtgtatgagattatgggcttacaatgaggagcatctgagggagtgtagtgctatgttgaattctattattttg |
24448782 |
T |
|
| Q |
232 |
ca |
233 |
Q |
| |
|
|| |
|
|
| T |
24448781 |
ca |
24448780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 20752705 - 20752575
Alignment:
| Q |
2 |
ggatggtacttccattttattttagtgggatccttggttggaaggagtagcttt-aaagatagattaagcctcctgtttgagcttgttgataataagatg |
100 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||| ||||||||||||||||||| |||| ||||||||||| | ||| ||||||||| |||||| |||||| |
|
|
| T |
20752705 |
ggatagtaattccatattattttggtggggtccttggttggaaggagtaactttgaaagatagattcaattccctttttgagctttctgataacaagatg |
20752606 |
T |
|
| Q |
101 |
actacggtggctgagatggagcttctagggt |
131 |
Q |
| |
|
||| ||| |||||||| |||| |||||| |
|
|
| T |
20752605 |
gttacaatggttgagatggtgcttttagggt |
20752575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 3765804 - 3765877
Alignment:
| Q |
160 |
cataagaggttatgggcgtgggtggaggagcagttgagggagtgtagtgatatgttgaactctattattttgca |
233 |
Q |
| |
|
|||| ||||| |||||| |||| ||||||||| |||||||||||| || |||||| || |||||||||||||| |
|
|
| T |
3765804 |
catatgaggtaatgggcttgggaggaggagcaactgagggagtgtaatgctatgttaaattctattattttgca |
3765877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 21081108 - 21081153
Alignment:
| Q |
77 |
tttgagcttgttgataataagatgactacggtggctgagatggagc |
122 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
21081108 |
tttgagctttctgataacaagatggctacggtggctgagatggagc |
21081153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 21085697 - 21085742
Alignment:
| Q |
77 |
tttgagcttgttgataataagatgactacggtggctgagatggagc |
122 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
21085697 |
tttgagctttctgataacaagatggctacggtggctgagatggagc |
21085742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University