View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4477_low_5 (Length: 318)
Name: NF4477_low_5
Description: NF4477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4477_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 63 - 310
Target Start/End: Complemental strand, 246255 - 246008
Alignment:
| Q |
63 |
cagtgactaagtgtgtatgatagattgaagaaaatgataaatatttctaaataaatgattcttatatgttgcttgtagcataaggtcaacaattgatagg |
162 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
246255 |
cagtgactaagtgtgtaagatagattgaagaaaatgataaatatttctaaat----gattcttatgtgttgcttgtagcataaggtcaacaattgatagg |
246160 |
T |
|
| Q |
163 |
tacaaaaaagcttgttcagatcattcaagtaccaccactaccactgaaattaacgctcaggtaaccaaattacac----atggctagtttgaattgattc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
246159 |
tacaaaaaagcttgttcagatcattcaagtaccaccactaccactgaaattaacgctcaggtaaccaaattacacattaatatctagtttgaattgattc |
246060 |
T |
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| Q |
259 |
agttttatttatatatcattttaaatgagttcaataatttggcagtattatc |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
246059 |
agttttatttatatatcattttaaacgagttcaataatttggcagtattatc |
246008 |
T |
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