View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478-insertion-2 (Length: 450)
Name: NF4478-insertion-2
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478-insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 37532087 - 37531644
Alignment:
| Q |
7 |
atatagtactacgatttatgtaacaaatgaataatctatcagggagcaggagtagctgagccaaattgtttgtttccatcaagtcagcctctcatgaact |
106 |
Q |
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| T |
37532087 |
atatagtactacgatttatgtaacaaatgaataatctatcagggagcaggagtagctgagccaaattgtttgtttccatcaagtcagcctctcatgaact |
37531988 |
T |
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| Q |
107 |
caaatcatgtggataattcgaggaattcagagaaagtaactaacagttcatgtttagagccgtgctatgccctaaaacaaccactgcatgctcgaccgtc |
206 |
Q |
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| T |
37531987 |
caaatcatgtggataattcgaggaattcagagaaagtaactatcagttcatgtttagagccgtgctatgccctaaagcaaccactacatgctcgaccgtc |
37531888 |
T |
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| Q |
207 |
tccaatcataaaaggaaccaatacggtgtccttacccggagaacataaaatcaggagtgatttacaaggcttggctttaacactaggaggtcctgcaagt |
306 |
Q |
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| T |
37531887 |
tccaatcataaaaggaaccaatacggtgtccttacccggagaacataaaatcaggagtgacttacaaggcttggctttaacactaggaggtcctgcaagt |
37531788 |
T |
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| Q |
307 |
ggaaataatgcttgaaccttagggggaaatattgaggaggttaataaggtttatgtaattgctctgtatttgaatggatgtgtttgtaggatcaaccatg |
406 |
Q |
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| T |
37531787 |
ggaaataatgcttgaaccttagggggaaatattgaggaggttaataaggtttatgtaattgctctgtatttgaatggatgtgtttgtaggatcaaccatg |
37531688 |
T |
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| Q |
407 |
agttatgtagtattgtgtttatttttctctcttttcggaataag |
450 |
Q |
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| T |
37531687 |
agttatgtagtattgtgtttatttttctctcttttcggaataag |
37531644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 26896783 - 26896596
Alignment:
| Q |
202 |
ccgtctccaatcataaaaggaaccaatacggtgtccttacccggagaacataaaatcaggagtgatttacaaggcttggctttaacactaggaggtcctg |
301 |
Q |
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|||||||| |||| |||| || | | || |||||||||||| | ||||||||||| ||| ||||| ||||||| |||||||||||||| ||||| ||| |
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| T |
26896783 |
ccgtctccgatcacaaaaagagctactaaggtgtccttacctgaagaacataaaactaggggtgatctacaagggttggctttaacacttggagggtctg |
26896684 |
T |
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| Q |
302 |
caagtggaaataatgcttgaaccttagggggaaatatt---gaggaggttaataaggtttat----gtaattgctctgtatttgaatgg |
383 |
Q |
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| T |
26896683 |
ctagtggaaaccatgtttgattc-taaggtgaaatattatggaggaggttaataatgtttatgtaagtaattgctctgtatttcaatgg |
26896596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 26896942 - 26896902
Alignment:
| Q |
36 |
aataatctatcagggagcaggagtagctgagccaaattgtt |
76 |
Q |
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| T |
26896942 |
aataatctatcagtgagcaggagtggctgaaccaaattgtt |
26896902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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