View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478-insertion-3 (Length: 437)
Name: NF4478-insertion-3
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478-insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 30665635 - 30666051
Alignment:
| Q |
8 |
ataggtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaata |
107 |
Q |
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| T |
30665635 |
ataggtaccgatggattggccggggaaggtgtcaacaatcttgacaatgtcatcttttgcgatattgtcatggcggaaaattccaatgcagacaccaata |
30665734 |
T |
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| Q |
108 |
cggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtgacaatgatgg |
207 |
Q |
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| T |
30665735 |
cggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcgttaccggtgacaatgatgg |
30665834 |
T |
|
| Q |
208 |
gcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgtt |
307 |
Q |
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| T |
30665835 |
gcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgtt |
30665934 |
T |
|
| Q |
308 |
gacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgataatgtcagcggct |
407 |
Q |
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| T |
30665935 |
gacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgataatgtcagcggct |
30666034 |
T |
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| Q |
408 |
tcacggtagcactgtct |
424 |
Q |
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| T |
30666035 |
tcacggtatctctgtct |
30666051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 99 - 388
Target Start/End: Original strand, 34435088 - 34435376
Alignment:
| Q |
99 |
acaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtga |
198 |
Q |
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| T |
34435088 |
acaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaa |
34435187 |
T |
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| Q |
199 |
caatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccat |
298 |
Q |
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| T |
34435188 |
caatgataggcacacgtgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccat |
34435287 |
T |
|
| Q |
299 |
ctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttccctt |
388 |
Q |
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| T |
34435288 |
ttgattgttcactgtgtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacat-tttccctt |
34435376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 120 - 400
Target Start/End: Original strand, 6853480 - 6853760
Alignment:
| Q |
120 |
gtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcattaccggtgacaatgatgggcacacgagcgt |
219 |
Q |
| |
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||||| |||||||||||||| |||||||| |||||||| || | ||||||||| | || ||||| ||||| || ||||| ||||| || || || || | |
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| T |
6853480 |
gtaggtgcccagtagaatttttccatacgtccatcacgaattaaaggagcatacaacgtagagaagtcattgccagtgacgatgatagggacgcgggcat |
6853579 |
T |
|
| Q |
220 |
tatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccatctggttgttgacagtgtattg |
319 |
Q |
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| T |
6853580 |
tctcttctttgttgtacataccgggaagttgaacattggtagggttgtcagcaatgttcatgagggttgcatttaccatctggttgttgactgtgtattg |
6853679 |
T |
|
| Q |
320 |
tgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttcccttcctgataatgtc |
400 |
Q |
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|| || |||||||| | ||| ||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| |
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| T |
6853680 |
agtagtgccacccattctaccagctcctgcatcaagatcattgatgaagagacagcacatctttccttttctgataatgtc |
6853760 |
T |
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