View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478-insertion-4 (Length: 436)
Name: NF4478-insertion-4
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 24 - 395
Target Start/End: Complemental strand, 31762031 - 31761667
Alignment:
| Q |
24 |
aagttaaattgttgaaggaaaaataaaattagtttctaaaggaacataaattaattcattatttttgcagtagtataactatatatttgaacaaggcaat |
123 |
Q |
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| T |
31762031 |
aagttaaattgttgaaggaaaaataaaattagtttctaaaggaacataaattaattcattatttttgtagtagtataactatatatttgagcaaggcaat |
31761932 |
T |
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| Q |
124 |
atctaatatgatgaatagtggatattttactcttctattgatgtttttatatctaataatcatgtcaaacaattaggtatcaatggtgcaagtttgcaag |
223 |
Q |
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| T |
31761931 |
atctaatatga---atagtggatattttactcttctattgatgtttttatatctaataatcatgtcaaacaattaggtatcaatggtgcaagtttgcaag |
31761835 |
T |
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| Q |
224 |
aaaagtagttgggttcatgttgtactcatgcaagagacttaaacttttttgtatactagatctctatagaattagatgtaaaaatacaacaataattttt |
323 |
Q |
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| T |
31761834 |
aaaagtagttgggttcatgttgtactcatgcaagagacttaaacttttttgtatac----tctctatagaattagatgtaaaaatacaacaataattttt |
31761739 |
T |
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| Q |
324 |
tgaaggaaaaatacaacaataattaaaaagcgataattttgtaacatactaaaatacagatccttctatatt |
395 |
Q |
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| T |
31761738 |
tgaaggaaaaatacaacaataattaaaaagcgataattttgtaacatgctaaaatatagatccttctttatt |
31761667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 31761654 - 31761606
Alignment:
| Q |
387 |
ttctatattaatttcaaacttattatgagttaaattatacgtgcatcat |
435 |
Q |
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| T |
31761654 |
ttctatattaatttcaaacttattatgagttaaattataagtgcatcat |
31761606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 31754213 - 31754175
Alignment:
| Q |
387 |
ttctatattaatttcaaacttattatgagttaaattata |
425 |
Q |
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| T |
31754213 |
ttctatattaatttcaaacttattttgagttcaattata |
31754175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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