View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478-insertion-5 (Length: 391)
Name: NF4478-insertion-5
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478-insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 391
Target Start/End: Complemental strand, 7375725 - 7375343
Alignment:
| Q |
6 |
cattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagta |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375725 |
cattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagta |
7375626 |
T |
|
| Q |
106 |
aaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgggccatcatttccatcatct |
205 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
7375625 |
aaagctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatct |
7375526 |
T |
|
| Q |
206 |
tctcattatcctccatcatccttttcaacattttcctattcccaccatcttcttccttataacaattctcctccttaacctcctcaaatccatttccaat |
305 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
7375525 |
tctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattctcc---------tcctcaaattcatttccaat |
7375435 |
T |
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| Q |
306 |
tctaccctcctcttctttcacatctaca------gcaattccttcctctaccaagcttgttcccacactctcttccttctcttctacctcca |
391 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7375434 |
tctaccctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctcca |
7375343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 391
Target Start/End: Original strand, 7278114 - 7278496
Alignment:
| Q |
6 |
cattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagta |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278114 |
cattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagta |
7278213 |
T |
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| Q |
106 |
aaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgggccatcatttccatcatct |
205 |
Q |
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|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
7278214 |
aatgctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatct |
7278313 |
T |
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| Q |
206 |
tctcattatcctccatcatccttttcaacattttcctattcccaccatcttcttccttataacaattctcctccttaacctcctcaaatccatttccaat |
305 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
7278314 |
tctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttccttataacaattct---------cctcctcaaattcatttccaat |
7278404 |
T |
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| Q |
306 |
tctaccctcctcttctttcacatctaca------gcaattccttcctctaccaagcttgttcccacactctcttccttctcttctacctcca |
391 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7278405 |
tctaccctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctcca |
7278496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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