View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478_high_1 (Length: 585)
Name: NF4478_high_1
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 6e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 36 - 349
Target Start/End: Original strand, 10169499 - 10169821
Alignment:
| Q |
36 |
catcatcatgatagcgggtttggtatctaacaacacctcctcttgcccaaagctatcaagttccctnnnnnnnnngttataatagatcatcgagtcttta |
135 |
Q |
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| T |
10169499 |
catcgtcatgatagcgggtccggtatctaacaacacctcctcttgcccaaagctatcaagttccgttaaaaaaaagttataatagatcatctagtcttta |
10169598 |
T |
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| Q |
136 |
aatttgtct---------aatcttaaagtatataattgtaacgaatggttcttactcaaagtttactagagtgaatataactcttgaatcatatgatata |
226 |
Q |
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| T |
10169599 |
aatctatctcttcaatataatcttaaagtatataaatgtaacgaatggttctgactcaaagtttactacattaaatataactcttgaatcatatgatata |
10169698 |
T |
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| Q |
227 |
ctccagttatcaattaattgccttttacatcaaatttaacgtattagctcaattgtgaaaatttaaccttacaacttcaaaatacaaaattcaaattcaa |
326 |
Q |
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| T |
10169699 |
ctctagttaacatttaattgccttttacatcaaatttaacgtattagctcaatggtaaaattttaaccttacaacttcaaaatacaaaattcaaattcta |
10169798 |
T |
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| Q |
327 |
cttggcaaagagaataaaataaa |
349 |
Q |
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| T |
10169799 |
cttggcaaagattataaaataaa |
10169821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 495 - 585
Target Start/End: Original strand, 10169964 - 10170054
Alignment:
| Q |
495 |
gggccaaacaaacatggatcttagggttttcaaaatcatagcccaaaacacacttcattcatctcaccatcacaaaacagacccttcttct |
585 |
Q |
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| T |
10169964 |
gggccaaacaaacatggatcttagggttttcaaaatcatagcccaaaacacactacattcatctcaccatcacataacagacccttcttct |
10170054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 394 - 466
Target Start/End: Original strand, 10169866 - 10169938
Alignment:
| Q |
394 |
atcaacaaaacaaaacaaattaacttttccaaatttatttttctccgtagctaaaaattgttaaaaagaataa |
466 |
Q |
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| T |
10169866 |
atcaacaaaacaaaacaaattaacttgtccaaatttatttttctccgtagctaaaaattgttaaaaagaataa |
10169938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 10168850 - 10168931
Alignment:
| Q |
197 |
gtgaatataactcttgaatcatatgatatactccagttatcaattaattgccttttacatcaaatttaacgtattagctcaa |
278 |
Q |
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| T |
10168850 |
gtgaatataactcttaaatcatatgatatactccaattaacacttcattgctttttaaatcaaatgtgatgtgttagctcaa |
10168931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 585
Target Start/End: Complemental strand, 22056992 - 22056918
Alignment:
| Q |
507 |
catggatcttagggttttcaaaatcatagcccaaaacacacttcattcatctcaccatcacaaaacagacccttcttct |
585 |
Q |
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| T |
22056992 |
catggatcttagggttt-caaaatcatagcccaaaacacact--attcatctcaaca-cacagaacaaacccttcttct |
22056918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 29924067 - 29924119
Alignment:
| Q |
41 |
tcatgatagcgggtttggtatctaacaacacctcctcttgcccaaagctatca |
93 |
Q |
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| T |
29924067 |
tcatgatcgcgggtccggtatctaacaacacctcctcttgaccaaatctatca |
29924119 |
T |
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