View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4478_high_11 (Length: 237)

Name: NF4478_high_11
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4478_high_11
NF4478_high_11
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-237)||(46982-47219)
[»] chr4 (4 HSPs)
chr4 (162-237)||(11314447-11314522)
chr4 (164-231)||(27918519-27918586)
chr4 (163-231)||(42380866-42380934)
chr4 (164-228)||(42170570-42170634)
[»] chr5 (4 HSPs)
chr5 (163-237)||(40279681-40279755)
chr5 (158-227)||(15711144-15711211)
chr5 (163-231)||(41954694-41954761)
chr5 (169-219)||(14045200-14045250)
[»] chr2 (5 HSPs)
chr2 (163-237)||(11129529-11129603)
chr2 (170-231)||(21425054-21425115)
chr2 (163-227)||(28694496-28694560)
chr2 (166-231)||(43264099-43264162)
chr2 (163-211)||(11842010-11842058)
[»] chr1 (3 HSPs)
chr1 (163-237)||(9001595-9001669)
chr1 (163-231)||(21937922-21937990)
chr1 (166-226)||(6947947-6948007)
[»] chr8 (4 HSPs)
chr8 (160-231)||(33822156-33822227)
chr8 (163-237)||(23052134-23052208)
chr8 (166-237)||(5374500-5374571)
chr8 (169-219)||(37288497-37288547)
[»] chr7 (2 HSPs)
chr7 (163-231)||(40343294-40343362)
chr7 (196-229)||(22597117-22597150)
[»] chr3 (3 HSPs)
chr3 (163-231)||(1214883-1214950)
chr3 (163-204)||(43978456-43978497)
chr3 (186-218)||(27039091-27039123)
[»] chr6 (2 HSPs)
chr6 (152-201)||(8543497-8543546)
chr6 (186-218)||(11213594-11213626)


Alignment Details
Target: scaffold0088 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47219 - 46982
Alignment:
Q  1 ctgaataaaaacaacaaaactacaatgatcatttataaagaggccaaagacattaattctctctttttactcatatcaagttgattacatccctagatat 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47219 ctgaataaaaacaacaaaactacaatgatcatttatatagaggccaaagacattaattctctctttttactcatatcaagttgattacatccgtagatat 47120  T
Q  101 tcacagaaatgaaata-ggtaaaagaagaaccaacaattaaattatattctatctgtcccactttatatgtcattctagcaaaatttatttatttcaaat 199  Q
    | |||||||||||| | |||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  47119 tgacagaaatgaaaaaaggtaaaagaaaaaccaacaattaaattatattccatctgttccactttatatgtcattctagcaaaatttatttgtttcaaat 47020  T
Q  200 tatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    |||||||||||||||||||| |||||||||||||||||    
T  47019 tatatgtcactttacaatatcaaagaatcattcatgtt 46982  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 11314522 - 11314447
Alignment:
Q  162 tttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||| |||||||||| ||||||||||| |||||    
T  11314522 tttatatgtcattctaccaaaatttatttgtttcaaattatatatcattttacaatatcaaagaatcattaatgtt 11314447  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 27918586 - 27918519
Alignment:
Q  164 tatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| || ||||||||    
T  27918586 tatatgtcattctagcaaaatttgtttctttcaaattatatgtcattttacaatatcaatgaatcatt 27918519  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 42380934 - 42380866
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    |||||||| |||||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||||||    
T  42380934 ttatatgtaattctaacaaaatttgtttgtttcaaattctatgtcactttacaatatcaaagaatcatt 42380866  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 42170570 - 42170634
Alignment:
Q  164 tatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatc 228  Q
    ||||||||||||||||||||| ||||| || ||| |||||||||| |||||||||| ||||||||    
T  42170570 tatatgtcattctagcaaaatctatttgttccaagttatatgtcattttacaatatcaaagaatc 42170634  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 40279755 - 40279681
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||    
T  40279755 ttatatgtcattctaacaaaatttgtttatttcaaattatatatcactttacaatattaatgaatcattaatgtt 40279681  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 15711211 - 15711144
Alignment:
Q  158 ccactttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaat 227  Q
    |||||||||| |||||| || |||||||| ||| |  ||||||||||||||||||||||||| |||||||    
T  15711211 ccactttataagtcattttaacaaaatttgtttgt--caaattatatgtcactttacaatatcaaagaat 15711144  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 41954761 - 41954694
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||| ||||||| |||| |  ||||||||||||||||||||||||  || ||||||||    
T  41954761 ttatatgtcattctaccaaaattcatttgtc-caaattatatgtcactttacaataacaaggaatcatt 41954694  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 14045250 - 14045200
Alignment:
Q  169 gtcattctagcaaaatttatttatttcaaattatatgtcactttacaatat 219  Q
    |||||||||  ||||||||||| | ||||||||||||||| ||||||||||    
T  14045250 gtcattctaataaaatttatttgtctcaaattatatgtcattttacaatat 14045200  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 11129529 - 11129603
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    ||||||||||||||| |||||||| ||| ||  |||||||||||||||||||||||| || |||||||| |||||    
T  11129529 ttatatgtcattctaacaaaatttgtttgttctaaattatatgtcactttacaatatcaaggaatcattaatgtt 11129603  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 21425054 - 21425115
Alignment:
Q  170 tcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||||| ||| || ||||||||| ||||||||||||| | |||||||||||    
T  21425054 tcattctagcaaaatttgtttgttccaaattatacgtcactttacaatgtcaaagaatcatt 21425115  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 28694560 - 28694496
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaat 227  Q
    |||||||| ||| ||||||||||||||| || ||||||| |||||| |||||||||| |||||||    
T  28694560 ttatatgttattttagcaaaatttatttgttccaaattacatgtcattttacaatattaaagaat 28694496  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 43264162 - 43264099
Alignment:
Q  166 tatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||||||||| ||| |  ||||  |||||||| |||||||||| |||||||||||    
T  43264162 tatgtcattctagcaaaatttgtttttcccaaa--atatgtcattttacaatatcaaagaatcatt 43264099  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 11842010 - 11842058
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactt 211  Q
    |||||||||||| || |||||||| ||| ||||||||||||| ||||||    
T  11842010 ttatatgtcattttaacaaaatttctttgtttcaaattatatttcactt 11842058  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 9001595 - 9001669
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    |||||||||||| || |||||||| ||| ||| |||||||||||||||||||||||| || |||||||| |||||    
T  9001595 ttatatgtcattttaacaaaatttgtttgttttaaattatatgtcactttacaatatcaatgaatcattaatgtt 9001669  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 21937922 - 21937990
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||| ||||||||||||   ||||||||||||||| |||| ||||| || ||||||||    
T  21937922 ttatatgtcattctaacaaaatttatttgcctcaaattatatgtcattttataatatcaatgaatcatt 21937990  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 6948007 - 6947947
Alignment:
Q  166 tatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaa 226  Q
    |||||||||||  |||||| ||||| | ||||||||||||||| |||||||||| ||||||    
T  6948007 tatgtcattctgacaaaatatatttgtatcaaattatatgtcaatttacaatatcaaagaa 6947947  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 33822156 - 33822227
Alignment:
Q  160 actttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||||||||||||||||||| || ||||||||| |  || ||||||||| || ||||||||    
T  33822156 actttatatgtcattctagcaaaatttatttgttccaaattatacgcgaccttacaatatcaaggaatcatt 33822227  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 23052134 - 23052208
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    |||||| |||| | |||||||||| ||| ||| |||||||||||||||||||||||| || |||||||| |||||    
T  23052134 ttatatatcatccgagcaaaatttgtttgttttaaattatatgtcactttacaatattaaggaatcattaatgtt 23052208  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 5374500 - 5374571
Alignment:
Q  166 tatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcattcatgtt 237  Q
    ||||||||| ||| ||||||| ||| || |||||||||||||| |||||||||| |  |||||||| |||||    
T  5374500 tatgtcattttagtaaaatttgtttgttccaaattatatgtcattttacaatatcattgaatcattaatgtt 5374571  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 37288547 - 37288497
Alignment:
Q  169 gtcattctagcaaaatttatttatttcaaattatatgtcactttacaatat 219  Q
    |||||| || |||| ||||||| ||| ||||||||||||||||||||||||    
T  37288547 gtcattttaacaaattttatttgttttaaattatatgtcactttacaatat 37288497  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 40343294 - 40343362
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    |||||||||||| ||| ||||||| ||||||  ||||||||||||||||||| |||| || ||||||||    
T  40343294 ttatatgtcattttagtaaaatttgtttattctaaattatatgtcactttacgatatcaaggaatcatt 40343362  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 22597117 - 22597150
Alignment:
Q  196 aaattatatgtcactttacaatatgaaagaatca 229  Q
    |||||||||||||||||||||||| |||||||||    
T  22597117 aaattatatgtcactttacaatataaaagaatca 22597150  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 1214950 - 1214883
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatatgtcactttacaatatgaaagaatcatt 231  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||  || ||||||||    
T  1214950 ttatatgtcattctaccaaaattcatttgtt-caaattatatgtcactttacaataacaaggaatcatt 1214883  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 43978497 - 43978456
Alignment:
Q  163 ttatatgtcattctagcaaaatttatttatttcaaattatat 204  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  43978497 ttatatgtcattttagcaaaatttatttattccaaattatat 43978456  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 27039123 - 27039091
Alignment:
Q  186 tatttatttcaaattatatgtcactttacaata 218  Q
    ||||||||||||||| |||||||||||||||||    
T  27039123 tatttatttcaaattgtatgtcactttacaata 27039091  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 8543497 - 8543546
Alignment:
Q  152 tctgtcccactttatatgtcattctagcaaaatttatttatttcaaatta 201  Q
    ||||| ||||||||||||||||| ||||||||||| ||| || |||||||    
T  8543497 tctgttccactttatatgtcattttagcaaaatttgtttgttccaaatta 8543546  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 11213626 - 11213594
Alignment:
Q  186 tatttatttcaaattatatgtcactttacaata 218  Q
    |||||||||||||||||||||| ||||||||||    
T  11213626 tatttatttcaaattatatgtcgctttacaata 11213594  T

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