View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4478_high_2 (Length: 492)

Name: NF4478_high_2
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4478_high_2
NF4478_high_2
[»] chr4 (19 HSPs)
chr4 (17-477)||(39506844-39507309)
chr4 (287-341)||(3144652-3144706)
chr4 (287-341)||(20743278-20743332)
chr4 (267-337)||(49659502-49659573)
chr4 (227-341)||(24343512-24343632)
chr4 (295-388)||(34515882-34515975)
chr4 (227-293)||(53381530-53381596)
chr4 (300-340)||(7424676-7424716)
chr4 (295-339)||(31243556-31243600)
chr4 (227-278)||(19482747-19482798)
chr4 (226-293)||(23292925-23292991)
chr4 (240-298)||(3947714-3947771)
chr4 (271-341)||(16402195-16402265)
chr4 (287-341)||(32910556-32910610)
chr4 (227-293)||(34306744-34306809)
chr4 (225-270)||(25950470-25950515)
chr4 (294-339)||(50848310-50848355)
chr4 (289-340)||(30520438-30520490)
chr4 (287-339)||(53968553-53968605)
[»] chr8 (14 HSPs)
chr8 (227-339)||(39820436-39820547)
chr8 (247-352)||(1676706-1676811)
chr8 (284-341)||(35431137-35431194)
chr8 (239-338)||(31580079-31580178)
chr8 (290-340)||(9936820-9936870)
chr8 (289-339)||(13845241-13845291)
chr8 (227-341)||(30067968-30068082)
chr8 (240-338)||(12559053-12559157)
chr8 (299-336)||(26507450-26507487)
chr8 (240-299)||(44067574-44067633)
chr8 (287-341)||(13009493-13009547)
chr8 (227-277)||(29510233-29510283)
chr8 (295-339)||(28883886-28883930)
chr8 (287-339)||(40063958-40064010)
[»] chr5 (17 HSPs)
chr5 (223-347)||(7997102-7997226)
chr5 (287-339)||(43554528-43554580)
chr5 (287-337)||(39695999-39696049)
chr5 (227-340)||(32630675-32630788)
chr5 (294-339)||(19293430-19293475)
chr5 (289-357)||(25863193-25863261)
chr5 (294-337)||(29365015-29365058)
chr5 (227-277)||(2436980-2437030)
chr5 (240-337)||(26312778-26312875)
chr5 (253-340)||(2577145-2577233)
chr5 (293-338)||(15410454-15410499)
chr5 (304-341)||(18162060-18162097)
chr5 (289-338)||(31264446-31264495)
chr5 (289-341)||(18607099-18607151)
chr5 (296-340)||(21577117-21577161)
chr5 (227-275)||(38464313-38464361)
chr5 (297-341)||(42469226-42469270)
[»] chr3 (22 HSPs)
chr3 (231-347)||(25651969-25652091)
chr3 (241-325)||(12100290-12100374)
chr3 (266-341)||(15864838-15864913)
chr3 (240-341)||(24204994-24205095)
chr3 (227-340)||(25074795-25074914)
chr3 (289-339)||(25892467-25892517)
chr3 (227-339)||(3730108-3730217)
chr3 (227-338)||(55401083-55401194)
chr3 (295-338)||(1830351-1830394)
chr3 (287-349)||(27903629-27903691)
chr3 (244-341)||(25365467-25365564)
chr3 (287-347)||(12704657-12704717)
chr3 (227-278)||(40052380-40052431)
chr3 (227-290)||(52369843-52369906)
chr3 (287-341)||(52369780-52369834)
chr3 (242-338)||(10954960-10955056)
chr3 (287-340)||(14223853-14223906)
chr3 (295-340)||(20691325-20691370)
chr3 (244-340)||(21149073-21149169)
chr3 (295-340)||(40150579-40150624)
chr3 (227-338)||(40993275-40993387)
chr3 (227-326)||(7171521-7171620)
[»] chr7 (16 HSPs)
chr7 (240-340)||(12278841-12278941)
chr7 (266-341)||(23751905-23751980)
chr7 (287-339)||(29812664-29812716)
chr7 (287-341)||(23930224-23930278)
chr7 (225-336)||(7133210-7133327)
chr7 (226-291)||(17852056-17852120)
chr7 (291-340)||(32855360-32855409)
chr7 (227-299)||(5409771-5409842)
chr7 (227-338)||(15680817-15680928)
chr7 (290-341)||(4017797-4017848)
chr7 (290-341)||(22683758-22683809)
chr7 (225-299)||(32093952-32094026)
chr7 (228-275)||(32308202-32308249)
chr7 (287-341)||(17780084-17780138)
chr7 (240-293)||(32287416-32287468)
chr7 (227-338)||(598216-598327)
[»] chr1 (18 HSPs)
chr1 (227-351)||(22794018-22794142)
chr1 (287-341)||(42004947-42005001)
chr1 (289-348)||(6936402-6936461)
chr1 (288-341)||(6573994-6574047)
chr1 (242-340)||(19637774-19637872)
chr1 (224-338)||(46348320-46348434)
chr1 (275-340)||(29415754-29415819)
chr1 (240-299)||(1486657-1486715)
chr1 (227-278)||(15323236-15323287)
chr1 (283-340)||(7988446-7988504)
chr1 (227-316)||(9690213-9690303)
chr1 (240-278)||(18190061-18190099)
chr1 (225-338)||(22515825-22515938)
chr1 (239-280)||(23219615-23219656)
chr1 (295-338)||(12040690-12040734)
chr1 (304-336)||(28676183-28676215)
chr1 (295-339)||(39101190-39101234)
chr1 (290-341)||(48415728-48415780)
[»] chr6 (20 HSPs)
chr6 (287-341)||(6389748-6389802)
chr6 (287-340)||(19602181-19602234)
chr6 (287-341)||(34446570-34446624)
chr6 (287-340)||(17168463-17168516)
chr6 (253-341)||(12235485-12235573)
chr6 (227-278)||(8776908-8776959)
chr6 (295-337)||(2153895-2153937)
chr6 (286-351)||(12086344-12086409)
chr6 (227-338)||(34595142-34595253)
chr6 (226-293)||(28152152-28152218)
chr6 (295-338)||(30781302-30781345)
chr6 (295-341)||(6299517-6299563)
chr6 (295-341)||(6306327-6306373)
chr6 (227-336)||(13364645-13364754)
chr6 (287-341)||(26247431-26247485)
chr6 (298-351)||(7625117-7625170)
chr6 (293-333)||(4420185-4420225)
chr6 (240-276)||(8389421-8389457)
chr6 (240-276)||(31959220-31959256)
chr6 (295-339)||(34895042-34895086)
[»] chr2 (19 HSPs)
chr2 (283-341)||(12748689-12748747)
chr2 (287-340)||(23354652-23354705)
chr2 (287-339)||(25544488-25544540)
chr2 (240-340)||(24011042-24011148)
chr2 (225-338)||(18840951-18841064)
chr2 (227-340)||(34006930-34007044)
chr2 (295-340)||(23355003-23355048)
chr2 (301-351)||(8817470-8817520)
chr2 (290-340)||(10535762-10535812)
chr2 (301-339)||(22085011-22085049)
chr2 (227-293)||(27084323-27084388)
chr2 (287-341)||(30563414-30563468)
chr2 (227-293)||(37419808-37419873)
chr2 (290-340)||(38919212-38919262)
chr2 (287-336)||(11308004-11308053)
chr2 (287-340)||(19573984-19574037)
chr2 (295-339)||(4229416-4229460)
chr2 (227-275)||(19980746-19980794)
chr2 (300-340)||(31026701-31026741)
[»] scaffold0199 (1 HSPs)
scaffold0199 (247-352)||(1943-2048)
[»] scaffold0598 (1 HSPs)
scaffold0598 (287-341)||(8053-8107)
[»] scaffold0778 (1 HSPs)
scaffold0778 (299-340)||(4412-4453)
[»] scaffold0652 (1 HSPs)
scaffold0652 (240-277)||(415-452)
[»] scaffold0053 (1 HSPs)
scaffold0053 (242-338)||(8806-8902)
[»] scaffold0049 (1 HSPs)
scaffold0049 (295-336)||(56932-56973)
[»] scaffold0361 (1 HSPs)
scaffold0361 (227-338)||(14538-14646)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 477
Target Start/End: Original strand, 39506844 - 39507309
Alignment:
Q  17 atgaatctatgcccggttcatacatgtttatgaacatgtggtgatgtgattnnnnnnnnnnnnncactcaaattaatgattctaagtcatggaataaaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||| |||||||||||||||||||||||||    
T  39506844 atgaatctatgcccggttcatacatgtttatgaacatgtggtgatgtgattaaaaatgaaaaaacactcaaatttatgattctaagtcatggaataaaaa 39506943  T
Q  117 acgaatgtgnnnnnnnacatgtgtgacaaattata-------gtaacaaggtgattcaagaggtctcttgttgtccaannnnnnnatgaatcttagtgtc 209  Q
    |||||||||       |||||||||||||||||||       ||||||||||||||||||||||||  ||||||||||       |||||||||||||||    
T  39506944 acgaatgtgtttttttacatgtgtgacaaattatataaaccagtaacaaggtgattcaagaggtct--tgttgtccaatttttttatgaatcttagtgtc 39507041  T
Q  210 ttaattatatcaaaaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattaca 309  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39507042 ttaattaaatcaaaaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatgattaca 39507141  T
Q  310 cttaattatatcattttcttaaattattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtggttcatagtcaacaaacaacg 409  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  39507142 cttaattatatcattttcataaattattatccttattgacgtatcggtattcaagtcgtgtctaatgtttgtgtatgtggttcatagtcaacaaacaacg 39507241  T
Q  410 ttaagatttatatcacacatatatccctgagtaagcagtaacaataaactagacaggatcatgataat 477  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  39507242 ttaagatttatatcaaacatatataccagagtaagcagtaacaataaactagacaggatcatgataat 39507309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 3144652 - 3144706
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3144652 ccgacacgacacctatgattacactaaattatatcattttctgaaattattatcc 3144706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 20743278 - 20743332
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatcc 20743332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 49659502 - 49659573
Alignment:
Q  267 tgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattatt 337  Q
    |||||| ||||| || ||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||    
T  49659502 tgtcgggcacgtgtcggtgtccgacaccaaaacctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 24343632 - 24343512
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 320  Q
    ||||||||||   ||||||||| ||||||| ||||| ||||||||||||||  || |||||      |||||| |||||||| |||||||| |||||| |    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgt 24343533  T
Q  321 cattttcttaaattattatcc 341  Q
     ||||||| ||||||||||||    
T  24343532 aattttctcaaattattatcc 24343512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 34515882 - 34515975
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtg 388  Q
    ||||||||| ||||||| |||||| |||||||||| ||||||||||| ||| ||||| ||  | |||  || |||||| |||||||||||||||    
T  34515882 acacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgtgtctgatgtttgtgtctgtg 34515975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 53381530 - 53381596
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 293  Q
    ||||||||||   |||||||||||| |||||||||| |||||||||| |||  ||||||||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacac 53381596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 7424716 - 7424676
Alignment:
Q  300 tatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatc 7424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 31243556 - 31243600
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||    
T  31243556 acacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 19482798 - 19482747
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 278  Q
    ||||||||||  ||||||||||||| |||||||||| | |||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgt 19482747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 23292925 - 23292991
Alignment:
Q  226 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 293  Q
    |||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || |||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacac 23292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 3947714 - 3947771
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacac 298  Q
    |||||||||||| ||||||||||  |||||||||||||| || ||||||||||| ||||    
T  3947714 acactcctcggattaggtgtgtcctggtgtcggacacgtgtc-gtgtccgacacgacac 3947771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 16402195 - 16402265
Alignment:
Q  271 ggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||||||| |||||||||||||| ||| |||| ||||||||  || || | ||||||| ||||||||||||    
T  16402195 ggacacgtgtcagtgtccgacacgacagctataattacactgtatcatgttattttctcaaattattatcc 16402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 32910610 - 32910556
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||||| |||||| || |||||||| |||||| ||||||||| ||||||||||||    
T  32910610 ccgacataacacccataattacactgaattatgtcattttctcaaattattatcc 32910556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 34306744 - 34306809
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 293  Q
    ||||||||||  |||| ||||| || |||| ||||||||||||||||||||| || |||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac 34306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 25950470 - 25950515
Alignment:
Q  225 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtc 270  Q
    ||||||||||||   |||||||||||| ||||||||||||||||||    
T  25950470 aactatgaagcatggacactcctcggattaggtgtgtctcggtgtc 25950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 50848310 - 50848355
Alignment:
Q  294 aacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||    
T  50848310 aacacctacgattacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 30520438 - 30520490
Alignment:
Q  289 gacacaacacctatgattacacttaattatatcattttctt-aaattattatc 340  Q
    ||||| ||||||||||||||||| |||||| ||||||| || |||||||||||    
T  30520438 gacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 53968605 - 53968553
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||| ||| |||||||  |||| |||||| ||||||||||||||||||||    
T  53968605 ccgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 326  Q
    ||||||||||   ||||| |||||| |||| ||||| || |||||||||||  || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttt 39820449  T
Q  327 cttaaattattat 339  Q
    || ||||||||||    
T  39820448 ctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 1676811 - 1676706
Alignment:
Q  247 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 346  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  1676811 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1676712  T
Q  347 gacgta 352  Q
    ||||||    
T  1676711 gacgta 1676706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 35431137 - 35431194
Alignment:
Q  284 tgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  35431137 tgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatcc 35431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 31580079 - 31580178
Alignment:
Q  239 aacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 337  Q
    ||||| ||||||| ||||||||| ||||||||| ||| || || | |||||||| | |||||||| |||||||| |||||| | ||||||||||||||||    
T  31580079 aacacccctcggattaggtgtgtttcggtgtcgaacatgtgtc-gcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattatt 31580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 9936870 - 9936820
Alignment:
Q  290 acacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||||| |||||||| | | ||||||||||||||||||||||||||||    
T  9936870 acacaacacatatgattatattgaattatatcattttcttaaattattatc 9936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  289 gacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||| |||||||||||||| || |||||||||||||||| ||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 30067968 - 30068082
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 326  Q
    ||||||||||   |||||| ||||| |||||||||| | |||||||||||   || || |||||| |  |||||| ||||| ||| |||||| |||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcatttt 30068067  T
Q  327 cttaaattattatcc 341  Q
    || ||||||||||||    
T  30068068 ctcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 338
Target Start/End: Original strand, 12559053 - 12559157
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc------tatgattacacttaattatatcattttcttaaat 333  Q
    |||||||| ||| ||| |||||| || |||||||||||| || |||||||| |  |||||      |||||||||||| |||||||||||||||| ||||    
T  12559053 acactcctgggattagatgtgtcccgttgtcggacacgtgtcggtgtccgagatgacaccaatacatatgattacactgaattatatcattttctcaaat 12559152  T
Q  334 tatta 338  Q
    |||||    
T  12559153 tatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 26507487 - 26507450
Alignment:
Q  299 ctatgattacacttaattatatcattttcttaaattat 336  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26507487 ctatgattacacttaattatattattttcttaaattat 26507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 44067633 - 44067574
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 299  Q
    |||||||||| | |||| |||||  ||||||||||||| ||||||||||||||| |||||    
T  44067633 acactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 13009493 - 13009547
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| |||| |||||||||||| ||||||||  |||||| ||||||||||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatcc 13009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 29510233 - 29510283
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 277  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 28883886 - 28883930
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattat 339  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||    
T  28883886 acacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 40064010 - 40063958
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||| || |||||||||||| | |||||| ||||||||| ||||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 7997102 - 7997226
Alignment:
Q  223 aaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatca 322  Q
    ||||| ||||||||  |||||| |||| | ||||||||||  | |||||||||||  |||||||||||||| |||| ||| ||||||||  |||||||||    
T  7997102 aaaacaatgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatca 7997201  T
Q  323 ttttcttaaattattatccttgttg 347  Q
    |||||| |||||||||||| |||||    
T  7997202 ttttctcaaattattatccgtgttg 7997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 39695999 - 39696049
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattatt 337  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 340
Target Start/End: Original strand, 32630675 - 32630788
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattt 325  Q
    ||||||||||   |||||||||| | ||||||||||||  |||||||||||| || || ||||||||  |||| ||| |||||| | |||||||| ||||    
T  32630675 ctatgaagcatagacactcctcgaattaggtgtgtctcaatgtcggacacgtgtc-gtatccgacactgacacatataattacattgaattatataattt 32630773  T
Q  326 tcttaaattattatc 340  Q
    ||| |||||||||||    
T  32630774 tctcaaattattatc 32630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 19293430 - 19293475
Alignment:
Q  294 aacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||    
T  19293430 aacacatatgattacacttaattatgttattttcttaaattattat 19293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 25863261 - 25863193
Alignment:
Q  289 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgat 357  Q
    ||||| |||| ||| |||||||| |||||||||||||||| |||||||||| | ||| ||||| |||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgat 25863193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 29365058 - 29365015
Alignment:
Q  294 aacacctatgattacacttaattatatcattttcttaaattatt 337  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||    
T  29365058 aacacctgtgattacatttaattataccattttcttaaattatt 29365015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 2437030 - 2436980
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 277  Q
    ||||||||||  ||||||||||||| |||| |||||| |||||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacg 2436980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 26312875 - 26312778
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 337  Q
    |||||||||||| ||||||||||  |||||| |||||||||| |||||||||| | | || ||| |||||||| |||||  | ||||||| ||||||||    
T  26312875 acactcctcggattaggtgtgtcctggtgtcagacacgtatc-gtgtccgacaccgatacatataattacactgaattaattgattttctcaaattatt 26312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 2577145 - 2577233
Alignment:
Q  253 taggtgtgtctcggtgtcggacacgtatcagtgtccgacac---aacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||| |||| ||||||||||||  ||| || ||||||||   ||||  |||||||||||| |||||| ||||||||| |||||||||||    
T  2577145 taggtgagtcttggtgtcggacacacatcggtatccgacaccggaaca--tatgattacactaaattatgtcattttctcaaattattatc 2577233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 15410454 - 15410499
Alignment:
Q  293 caacacctatgattacacttaattatatcattttcttaaattatta 338  Q
    |||||| |||||||||||| ||| |||| |||||||||||||||||    
T  15410454 caacacatatgattacactgaatcatataattttcttaaattatta 15410499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 18162097 - 18162060
Alignment:
Q  304 attacacttaattatatcattttcttaaattattatcc 341  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatcc 18162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  289 gacacaacacctatgattacacttaattatatcattttcttaaattatta 338  Q
    ||||| |||| |||||||||||| |||||| ||||||||| |||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 18607099 - 18607151
Alignment:
Q  289 gacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatcc 18607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 21577117 - 21577161
Alignment:
Q  296 cacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||| ||||||||||||||| | ||||||| |||||||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattattatc 21577161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 275  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 42469270 - 42469226
Alignment:
Q  297 acctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||||||||||| || ||| ||||||||| ||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatcc 42469226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 347
Target Start/End: Original strand, 25651969 - 25652091
Alignment:
Q  231 gaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtcc------gacacaacacctatgattacacttaattatatcatt 324  Q
    |||||| | |||||| ||||| ||||||||||||||||||| |||||| || ||||||      |||||||||||||| | |||||| ||||||||||||    
T  25651969 gaagcactgacactcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcatt 25652068  T
Q  325 ttcttaaattattatccttgttg 347  Q
    |||| |||||||||||| |||||    
T  25652069 ttctcaaattattatccgtgttg 25652091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 12100374 - 12100290
Alignment:
Q  241 cactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattt 325  Q
    ||||||||||| |||||||||| ||||||||||||||  | |||||| ||||| |||||||| |||||||| |||||||||||||    
T  12100374 cactcctcggactaggtgtgtcccggtgtcggacacgcgttagtgtcagacacgacacctattattacactgaattatatcattt 12100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 15864913 - 15864838
Alignment:
Q  266 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  15864913 gtgtcagacacgtgtcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatcc 15864838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 341
Target Start/End: Original strand, 24204994 - 24205095
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    |||||||||| | |||| |||||  |||||||||||||  |||||||||||||| |||| ||| ||||||||  ||||| ||||||||| ||||||||||    
T  24204994 acactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttctcaaattattat 24205093  T
Q  340 cc 341  Q
    ||    
T  24205094 cc 24205095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 340
Target Start/End: Complemental strand, 25074914 - 25074795
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 320  Q
    ||||||||||  ||||||||||||| |||||||||| | ||||||||||||  |  |||||      ||||||||| |||||||||||||| |||||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  321 cattttcttaaattattatc 340  Q
    |||||||| |||||||||||    
T  25074814 cattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 25892517 - 25892467
Alignment:
Q  289 gacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 3730108 - 3730217
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 326  Q
    ||||||||||   |||||||||||| |||||||||| |||||   |||| | ||  ||||| ||||| ||||||||||||||||| |||||| ||||| |    
T  3730108 ctatgaagcatggacactcctcggattaggtgtgtcccggtg---gacatgcattggtgtcagacacgacacctatgattacactgaattatgtcattat 3730204  T
Q  327 cttaaattattat 339  Q
    || ||||||||||    
T  3730205 ctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 55401194 - 55401083
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 325  Q
    ||||||||||   |||||||||||| |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgattt 55401096  T
Q  326 tcttaaattatta 338  Q
    | | |||||||||    
T  55401095 tttcaaattatta 55401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 1830394 - 1830351
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattatta 338  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  1830394 acacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 27903691 - 27903629
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgac 349  Q
    |||||||||||| |||||||||| | ||||||||| |||||| |||||||||||  |||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgttgac 27903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 341
Target Start/End: Complemental strand, 25365564 - 25365467
Alignment:
Q  244 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||| || |||| |||||  ||||||| ||||  ||| ||||||||||| |||| |||||||||||  |||||| |||| |||| ||||||||||||    
T  25365564 tcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 12704657 - 12704717
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttg 347  Q
    ||||||| ||||||||||||||| | |||||| ||||||| | |||||||||||| |||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 40052431 - 40052380
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 278  Q
    ||||||||||  ||||||||||||| |||| ||||| |||||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 52369906 - 52369843
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccga 290  Q
    ||||||||||   ||||||||||||||||||||||| |||||| |||||||  || ||||||||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccga 52369843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 52369834 - 52369780
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 10955056 - 10954960
Alignment:
Q  242 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 338  Q
    |||||||||| |||| ||||| | ||||||||||||| || |||||||||| | |||| | |||||||||| |||||| | ||||| | |||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 14223853 - 14223906
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||| |||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 20691370 - 20691325
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  20691370 acacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 21149169 - 21149073
Alignment:
Q  244 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||||| ||||||||| |||||||| |||||   |  |||||||||| | ||| || |||||||||| |||||| ||||||||| |||||||||||    
T  21149169 tcctcggattaggtgtgt-tcggtgtcagacacacgttggtgtccgacaacgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 40150579 - 40150624
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||| |||||||||| | |||||||||||||||| |||||||||||    
T  40150579 acacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 40993275 - 40993387
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca-tt 324  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||| || || |||||||||| | |||| ||| |||||||| |||||| | | ||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacacatataattacactgaattatgtgattt 40993373  T
Q  325 ttcttaaattatta 338  Q
    || |||||||||||    
T  40993374 tttttaaattatta 40993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 326
Target Start/End: Complemental strand, 7171620 - 7171521
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 325  Q
    ||||||||||   |||||||| ||| |||| ||||| ||||||||||||||| || |||||||||| |||||| | | |||||||  |||||||| ||||    
T  7171620 ctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtc-gtgtccgacaccaacacttgtaattacaccgaattatatgattt 7171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 12278941 - 12278841
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    |||||||| ||| |||||||||| ||||||| ||||||  |  ||||||||||| |||| ||| |||||||| |||||| ||||||||||||||||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T
Q  340 c 340  Q
    |    
T  12278841 c 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 23751980 - 23751905
Alignment:
Q  266 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||| ||||||  || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  23751980 gtgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcattttatcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 29812664 - 29812716
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 23930278 - 23930224
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatcc 23930224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 7133210 - 7133327
Alignment:
Q  225 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac------aacacctatgattacacttaattat 318  Q
    ||||||||||||   || |||||| || |||||||||| | ||||||||||||  || |||||||||||      | |||||||||||||||| ||||||    
T  7133210 aactatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattat 7133309  T
Q  319 atcattttcttaaattat 336  Q
     ||||||||| |||||||    
T  7133310 gtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 17852120 - 17852056
Alignment:
Q  226 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac 291  Q
    |||||||||||   |||||||||| | |||||||||||||||||||||||||| ||| ||||||||    
T  17852120 actatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgtca-tgtccgac 17852056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 32855409 - 32855360
Alignment:
Q  291 cacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||||| |||||||||| | ||||| ||||||||||||||||||||||    
T  32855409 cacaacacatatgattacattcaattaaatcattttcttaaattattatc 32855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 5409771 - 5409842
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 299  Q
    ||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 5409842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 15680928 - 15680817
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 325  Q
    ||||||||||   |||||||||| | |||  ||||||||||||||||||||| || |||||||||| | |||| ||| |||||||| |||||| | ||||    
T  15680928 ctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttataattacactaaattatgtgattt 15680830  T
Q  326 tcttaaattatta 338  Q
    | || ||||||||    
T  15680829 tttttaattatta 15680817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 4017797 - 4017848
Alignment:
Q  290 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||| |||| |||||||||||| ||||||||| |||||| ||||||||||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatcc 4017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 22683758 - 22683809
Alignment:
Q  290 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||| |||||||||||| |||| ||||||||||| |||| ||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatcc 22683809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 32093952 - 32094026
Alignment:
Q  225 aactatgaagcagtaacactcctcggaataggtgtgt-ctcggtgtcggacacgtatcagtgtccgacacaacacc 299  Q
    ||||||||||||  ||||||||||||| |||| |||| | ||||||||||||||| || ||||||||||| |||||    
T  32093952 aactatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtc-gtgtccgacacgacacc 32094026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 32308249 - 32308202
Alignment:
Q  228 tatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 275  Q
    |||||||||  ||||||||||||| ||| |||||||||||||||||||    
T  32308249 tatgaagcatgaacactcctcggattagctgtgtctcggtgtcggaca 32308202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 17780084 - 17780138
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| |||||||| ||||||   |||||| ||||||||||||||||||||||    
T  17780084 ccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 32287416 - 32287468
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 293  Q
    |||||||||||| |||||||||| ||||||||||||| | ||| ||||||||||    
T  32287416 acactcctcggattaggtgtgtcccggtgtcggacacttgtca-tgtccgacac 32287468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 598327 - 598216
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 325  Q
    ||||||||||   ||||| |||||| |||| ||||| ||||||||||||||| || ||||| |||| | |||| ||  |||||| |||||||  | ||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacacttacaattacatttaattacgtgattt 598229  T
Q  326 tcttaaattatta 338  Q
    |||||||||||||    
T  598228 tcttaaattatta 598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 351
Target Start/End: Original strand, 22794018 - 22794142
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 326  Q
    ||||||||||   |||||||||| | |||||||||| ||| |||||||| |  |||||||| ||||| |||||||| ||||||||  ||||| |||||||    
T  22794018 ctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacacgacacctataattacactgtattatgtcatttt 22794117  T
Q  327 cttaaattattatccttgttgacgt 351  Q
     | |||||||||||| |||||||||    
T  22794118 ttcaaattattatccgtgttgacgt 22794142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 42004947 - 42005001
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatcc 42005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 6936402 - 6936461
Alignment:
Q  289 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttga 348  Q
    ||||| |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttga 6936461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 6574047 - 6573994
Alignment:
Q  288 cgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatcc 6573994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 19637872 - 19637774
Alignment:
Q  242 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||||||| |||| | ||| |||||||||| | ||||| |||||||||||  |||| |||||||||| | ||| || |||||||||||||||||||||    
T  19637872 actcctcggattaggggcgtcccggtgtcggatatgtatc-gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatc 19637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 338
Target Start/End: Original strand, 46348320 - 46348434
Alignment:
Q  224 aaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca 322  Q
    |||||||||||||   |||| |||||||  ||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||||| |    
T  46348320 aaactatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatatga 46348418  T
Q  323 ttttcttaaattatta 338  Q
    |||| | |||||||||    
T  46348419 ttttttcaaattatta 46348434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 29415819 - 29415754
Alignment:
Q  275 acgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||| |||||||| |||||||||| | ||||||  || |||||| |||||||||||||||||||||    
T  29415819 acgtgtcagtgtctgacacaacacatgtgattatgctgaattatgtcattttcttaaattattatc 29415754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 1486657 - 1486715
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 299  Q
    |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  1486657 acactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 1486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 15323287 - 15323236
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 278  Q
    ||||||| || | |||||||||||| ||||||||| ||||||||||||||||    
T  15323287 ctatgaaacactgacactcctcggattaggtgtgtttcggtgtcggacacgt 15323236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 7988446 - 7988504
Alignment:
Q  283 gtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||||||| ||||| |||||||||| | |||||| ||| |||||||||||||||||    
T  7988446 gtgtccgacaccaacacttatgattacattgaattatgtcactttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 9690213 - 9690303
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac-acaacacctatgattacacttaatt 316  Q
    ||||||||||  |||||||  |||| |||| ||||| ||||||||||||||| |||||| |||||  | |||| |||||||||||| ||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtcagtggccgacgccgacacatatgattacactgaatt 9690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 18190061 - 18190099
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgt 278  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgt 18190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 22515825 - 22515938
Alignment:
Q  225 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 323  Q
    ||||||||||||   |||||||||||| |||| |||||||||||||||| | || || |||||||||| | |||| | | |||||||| |||||| | ||    
T  22515825 aactatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgat 22515923  T
Q  324 tttcttaaattatta 338  Q
    ||| | |||||||||    
T  22515924 tttttcaaattatta 22515938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 23219615 - 23219656
Alignment:
Q  239 aacactcctcggaataggtgtgtctcggtgtcggacacgtat 280  Q
    |||||| |||||| |||||||||| |||||||||||||||||    
T  23219615 aacacttctcggattaggtgtgtcacggtgtcggacacgtat 23219656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 12040690 - 12040734
Alignment:
Q  295 acacctatgattacacttaa-ttatatcattttcttaaattatta 338  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||    
T  12040690 acacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 28676183 - 28676215
Alignment:
Q  304 attacacttaattatatcattttcttaaattat 336  Q
    ||||||||||||||||| |||||||||||||||    
T  28676183 attacacttaattatattattttcttaaattat 28676215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 39101190 - 39101234
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattat 339  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||||    
T  39101190 acacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 48415728 - 48415780
Alignment:
Q  290 acacaacacctatgattacacttaattatatcattttctt-aaattattatcc 341  Q
    |||| ||| ||||||||||||| |||||||||||||| || ||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatcc 48415780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 6389802 - 6389748
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatcc 6389748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 19602181 - 19602234
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  19602181 ccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 34446624 - 34446570
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  34446624 ccgacacgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 17168463 - 17168516
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 12235485 - 12235573
Alignment:
Q  253 taggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||| ||||| ||||| |||||||   || ||||| ||||| ||||||||||||||||| |||||| |||||||||  |||||||||||    
T  12235485 taggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 8776908 - 8776959
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 278  Q
    ||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgt 8776959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 2153895 - 2153937
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattatt 337  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  2153895 acacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 12086344 - 12086409
Alignment:
Q  286 tccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 351  Q
    |||||||| ||||||||||||| ||| |||||| ||||| ||| |||||||||||| ||| |||||    
T  12086344 tccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgt 12086409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 34595253 - 34595142
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 325  Q
    ||||||||||   |||||||||||| |||||||||| ||||||| ||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacacttgtaattacactgaattatgtgattt 34595155  T
Q  326 tcttaaattatta 338  Q
    | | |||||||||    
T  34595154 tttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 28152218 - 28152152
Alignment:
Q  226 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 293  Q
    |||||||||||  ||||||||||||| ||||  |||| ||||||||||||||| || |||||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc-gtgtccgacac 28152152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 30781302 - 30781345
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattatta 338  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||    
T  30781302 acacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 6299563 - 6299517
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6299563 acacctatcattacattgaattatatcattttctcaaattattatcc 6299517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 6306373 - 6306327
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6306373 acacctatcattacattgaattatatcattttctcaaattattatcc 6306327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 336
Target Start/End: Original strand, 13364645 - 13364754
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 325  Q
    ||||||||||   |||||| |||||||||  |||||  |||||| |||| ||||| |||||| ||||  |||| |||||||||||| |||||||| ||||    
T  13364645 ctatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatc-gtgtccaacaccgacacatatgattacactgaattatatgattt 13364743  T
Q  326 tcttaaattat 336  Q
    ||| |||||||    
T  13364744 tctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 26247485 - 26247431
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| | ||||||||||| ||| || ||| ||||||||||||||||||||||    
T  26247485 ccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatcc 26247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 7625170 - 7625117
Alignment:
Q  298 cctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 351  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||| ||| |||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgt 7625117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 4420185 - 4420225
Alignment:
Q  293 caacacctatgattacacttaattatatcattttcttaaat 333  Q
    ||||||||||| ||||||| |||||||||||||||| ||||    
T  4420185 caacacctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 8389421 - 8389457
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacac 276  Q
    |||||||||||| |||||||||| |||||||||||||    
T  8389421 acactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 31959256 - 31959220
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacac 276  Q
    |||||||||||| |||||||||| |||||||||||||    
T  31959256 acactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 34895042 - 34895086
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  34895042 acacctatgattacactgaattgtataattttctcaaattattat 34895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 12748747 - 12748689
Alignment:
Q  283 gtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  12748747 gtgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 25544540 - 25544488
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 24011148 - 24011042
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca------acacctatgattacacttaattatatcattttcttaaat 333  Q
    |||||| ||||| || |||||||| ||||||||||||| ||| || || |||||       ||||||||||||||||| |||||| ||||||||| ||||    
T  24011148 acactcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaat 24011049  T
Q  334 tattatc 340  Q
    |||||||    
T  24011048 tattatc 24011042  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 18840951 - 18841064
Alignment:
Q  225 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 323  Q
    ||||||||||||   |||||||||||| |||||||||| |||||||||||| || || ||||| |||| | |||| | | ||||||||||||||| | ||    
T  18840951 aactatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtc-gtgtctgacaccgacacttgtaattacacttaattatgtaat 18841049  T
Q  324 tttcttaaattatta 338  Q
    ||| | |||||||||    
T  18841050 tttttcaaattatta 18841064  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 340
Target Start/End: Original strand, 34006930 - 34007044
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 325  Q
    ||||||||||   |||||||| | | |||||||||  ||||||| |||||| ||  |||||| ||||  ||||||||||||||||| |||||| ||| ||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaatt 34007029  T
Q  326 tcttaaattattatc 340  Q
    ||| |||||||||||    
T  34007030 tctcaaattattatc 34007044  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 23355003 - 23355048
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||    
T  23355003 acacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 8817470 - 8817520
Alignment:
Q  301 atgattacacttaattatatcattttcttaaattattatccttgttgacgt 351  Q
    ||||||||||| ||||||| ||| ||||||||||||||||  |||||||||    
T  8817470 atgattacactgaattataccatgttcttaaattattatcggtgttgacgt 8817520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  290 acacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||| |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 22085049 - 22085011
Alignment:
Q  301 atgattacacttaattatatcattttcttaaattattat 339  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattat 22085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 27084388 - 27084323
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 293  Q
    |||||||||||  ||||||||| || |||| |||||||||||| |||||||| || |||||||||||    
T  27084388 ctatgaagcagagacactcctccgattaggcgtgtctcggtgttggacacgtgtc-gtgtccgacac 27084323  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 30563468 - 30563414
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||||||||||||  ||||| | |||||| ||||||||| ||||||||||||    
T  30563468 ccgacacaacacctatagttacattgaattatgtcattttctcaaattattatcc 30563414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 37419873 - 37419808
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 293  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||||| ||| |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacac 37419808  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 38919262 - 38919212
Alignment:
Q  290 acacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||| ||||||||||||||||| || |||| |||||||| |||||||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatc 38919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 11308004 - 11308053
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattat 336  Q
    ||||||| ||||||||||||||||| |||||| ||||||| | |||||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 19574037 - 19573984
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||||  ||||||| |||||||| |||||| | |||||||||||||||||||    
T  19574037 ccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 4229416 - 4229460
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattattat 339  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4229416 acacatatgattacactgaattatgtcattctcttaaattattat 4229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 19980794 - 19980746
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 275  Q
    ||||||||||  |||||| |||||| ||||||||||||| |||||||||    
T  19980794 ctatgaagcatgaacacttctcggattaggtgtgtctcgatgtcggaca 19980746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 31026741 - 31026701
Alignment:
Q  300 tatgattacacttaattatatcattttcttaaattattatc 340  Q
    |||||||||| | |||||| |||||||||||||||||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 2048 - 1943
Alignment:
Q  247 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 346  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  2048 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1949  T
Q  347 gacgta 352  Q
    ||||||    
T  1948 gacgta 1943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 8053 - 8107
Alignment:
Q  287 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 341  Q
    ||||||| | ||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  8053 ccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatcc 8107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 4453 - 4412
Alignment:
Q  299 ctatgattacacttaattatatcattttcttaaattattatc 340  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||    
T  4453 ctatgatgacactgaattatatcatattcttaaattattatc 4412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 415 - 452
Alignment:
Q  240 acactcctcggaataggtgtgtctcggtgtcggacacg 277  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  415 acactcctcggattaggtgtgtcccggtgtcggacacg 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 8902 - 8806
Alignment:
Q  242 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 338  Q
    ||||||| || |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| ||| |||| ||||| | |||||||||    
T  8902 actcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattatta 8806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 56973 - 56932
Alignment:
Q  295 acacctatgattacacttaattatatcattttcttaaattat 336  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  56973 acacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 338
Target Start/End: Complemental strand, 14646 - 14538
Alignment:
Q  227 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 326  Q
    ||||||||||   ||||||||  || |||| ||||||||||||||||||||| || |||||||||||  ||| | | |||||||| |||||| | |||||    
T  14646 ctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac--cacttgtaattacactgaattatgtgatttt 14550  T
Q  327 cttaaattatta 338  Q
     | |||||||||    
T  14549 ttcaaattatta 14538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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