View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4478_high_9 (Length: 246)
Name: NF4478_high_9
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44689672 - 44689910
Alignment:
| Q |
1 |
cgcaaaagctacaaaaccaattgtattaaaccaacatcttttacttagtcatagcaacaaatttttattgaaagaatgaatagccaataatgcaggtcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44689672 |
cgcaaaagctacaaaaccaattgtattaaaccaacatcttttacttagtcatagcaacaaatttttactgaaagaatgaatagccaataatgcaggtcat |
44689771 |
T |
|
| Q |
101 |
tttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaacttaact |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44689772 |
tttgtaccaaacaaaaaagatgattatacaagtatgctaatttttttgagttagacatatacctctcacaagggatcagtttaatcaggtaaacttaact |
44689871 |
T |
|
| Q |
201 |
tatcatggtactaaaaagatgtttccccgacagtataat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44689872 |
tatcatggtactaaaaagatgtttccccgacagtgtaat |
44689910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 44680410 - 44680645
Alignment:
| Q |
2 |
gcaaaagctacaaaaccaattgtattaaaccaacatcttttacttagtcatagcaacaaatttttattgaaagaatgaatagccaataatgcag---gtc |
98 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| || ||||||||| |||||||||||||| || |
|
|
| T |
44680410 |
gcaaaagctacaaaaccaattgtgttaaaccaacatcttttacttagtcctagca--aaattttgctt-aaagaatgaggagccaataatgcagaaaatc |
44680506 |
T |
|
| Q |
99 |
attttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaacttaa |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||| ||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
44680507 |
attttgtaccaaacaaaaaacttgattatacaagtatgctta--tttttgagttagacacataactctcaccagggctcaatttaatcaggtaaacttaa |
44680604 |
T |
|
| Q |
199 |
cttatcatggtactaaaaagatgtttccccgacagtataat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44680605 |
cttatcatggtactaaaaagatgtttccccgacagtgtaat |
44680645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 234
Target Start/End: Complemental strand, 41983801 - 41983667
Alignment:
| Q |
96 |
gtcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaact |
195 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||| ||||| |||| ||| |||||| || ||| | |
|
|
| T |
41983801 |
gtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaattttta--agttaaacacatac--ctcacgagggctcaatttaattagataagca |
41983706 |
T |
|
| Q |
196 |
taacttatcatggtactaaaaagatgtttccccgacagt |
234 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
41983705 |
taacttatcgtggtactaaaaagatatttccccaacagt |
41983667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University