View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478_low_14 (Length: 237)
Name: NF4478_low_14
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 44689236 - 44689450
Alignment:
| Q |
18 |
ccctcatatgtgtaannnnnnncaatgaatcttctatcactttcttcaacacttggcgatgaaaaaacaaagctgagttgtctattctttttcgttgtat |
117 |
Q |
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| T |
44689236 |
ccctcatatgtgtaatttttttcaatgaatcttctatcactttcttcaacacttggcaatgaaaaaacaaagctgagttgtctattctttttcgttgtat |
44689335 |
T |
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| Q |
118 |
cataatttgaatgaaagggatcctctgcattggtttattaaattgctcatactatgttagtaaataaccaagttatatatggtttatggcttttgttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689336 |
cataatttgaatgaaagggatcctctgcattggtttgttaaattgctcatactatgttagtaaataaccaagttatatatggtttatggcttttgttcat |
44689435 |
T |
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| Q |
218 |
atttactttgttaca |
232 |
Q |
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||||||||||||||| |
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| T |
44689436 |
atttactttgttaca |
44689450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 44680134 - 44680260
Alignment:
| Q |
76 |
atgaaaaaacaaagctgagttgtctattctttttcgttgtatcataatttgaatgaaagggatcctctgcattggtttattaaattgctcatactatgtt |
175 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
44680134 |
atgaaaaaacaaagctgagttgtctattctttttagttgtatcataatttgaatgaaagggatcatgtgcattggtttattaaattgctcatactatgtt |
44680233 |
T |
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| Q |
176 |
agtaaataaccaagttatatatggttta |
203 |
Q |
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| T |
44680234 |
agtaaataactaag-tatatatggttta |
44680260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 41983953 - 41983907
Alignment:
| Q |
112 |
ttgtatcataatttgaatgaaagggatcctctgcattggtttattaaa |
159 |
Q |
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| T |
41983953 |
ttgtatcatcatttgaatgaaagg-atcctgtgcattggtttattaaa |
41983907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 18990749 - 18990683
Alignment:
| Q |
113 |
tgtatcataatttgaatgaaagggatcctctgcattggtttattaaattgctcatactatgttagtaa |
180 |
Q |
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| T |
18990749 |
tgtatcataatttgaatgaa-gtgattgtgtgcattggtttattaaattgtttgtactatgttagtaa |
18990683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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