View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478_low_3 (Length: 465)
Name: NF4478_low_3
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 2 - 313
Target Start/End: Complemental strand, 53635605 - 53635295
Alignment:
| Q |
2 |
ggtggatacatatagaataatgtaaaaagggagcaaggctttatcccctagaacataacatgtcctttcgtccctgtttagaagtatactccaaaaatat |
101 |
Q |
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| T |
53635605 |
ggtggatacatatagaataatgtaaaaagggagcaaggctttatcccctagaacataacatgtcctttcgtccctgtttagaagtatactccaaaaatat |
53635506 |
T |
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| Q |
102 |
gtgaaacgttgtagaattcagatggtgaaatacactca----ataacaaatgatgtttgatttgtctaatgtgtgcacaagtaaataagtcacactgtgc |
197 |
Q |
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| T |
53635505 |
gtgaatcgttgtagaattcagatggtgaaatacactcactcaataacaaatgatgtttgattt-----atgtgtgcacaagtaaataagtcacattgtgc |
53635411 |
T |
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| Q |
198 |
ataaatatatttttatcattatatcaatcaataagtcacatttgatcagggacagactcagaagtttccagtagtgacggcaatatacatataattaaaa |
297 |
Q |
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| T |
53635410 |
ataaatatatttttatcattatatcaatcaataagtcacatttgatcagagacagactcagaagtttccagtagtgacggcaatatatatataattaaaa |
53635311 |
T |
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| Q |
298 |
agcattaaatgtattt |
313 |
Q |
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| T |
53635310 |
agcattaaatgtattt |
53635295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 331
Target Start/End: Complemental strand, 53633612 - 53633525
Alignment:
| Q |
243 |
tcagggacagactcagaagtttccagtagtgacggcaatatacatataattaaaaagcattaaatgtatttcttacaaaaacataaata |
331 |
Q |
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| T |
53633612 |
tcagggacagacccagaagtttcgactagtgaaggcaatatacatataattaagaagtattaaatgaattt-ttttaaaaacataaata |
53633525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 53635281 - 53635227
Alignment:
| Q |
301 |
attaaatgtatttcttacaaaaacataaatattcataatttttggttgttgtgtgc |
356 |
Q |
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| T |
53635281 |
attaaatgtatttcttac-aaaacataaatatacatcatagttggttgttgtgtgc |
53635227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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