View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478_low_4 (Length: 446)
Name: NF4478_low_4
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 45242098 - 45242503
Alignment:
| Q |
17 |
aagaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctata--cataccatattt |
114 |
Q |
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| T |
45242098 |
aagaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctatatacataccatattt |
45242197 |
T |
|
| Q |
115 |
aaatttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaac |
214 |
Q |
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| T |
45242198 |
aaatttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaac |
45242297 |
T |
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| Q |
215 |
tttcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacagcaaatgggttttcagcgataaggagaatg |
314 |
Q |
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| T |
45242298 |
tttcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacaacaaatgggttttcagggataaggagaatg |
45242397 |
T |
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| Q |
315 |
tagatagggcgtagtgacgtacaatatgtacagaaactaggtgtgttgttaagagatttcaacaataaaacaaaccaaaagtacacttcatgtaacatag |
414 |
Q |
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| T |
45242398 |
tagatggggcgtagtgacgtacaatatgtacagaaactaggtgtgttgttaagagatttcaacaataaaacaaaccaaaaatacacttcatgtaacatag |
45242497 |
T |
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| Q |
415 |
tcaaat |
420 |
Q |
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| T |
45242498 |
tcaaat |
45242503 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 11425493 - 11425447
Alignment:
| Q |
129 |
aaacccaaacaacactaccgtacaactaacacaggttgaaccaaaat |
175 |
Q |
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| T |
11425493 |
aaacccaaacaacactaccatacgactaacacgtgttgaaccaaaat |
11425447 |
T |
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