View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478_low_5 (Length: 407)
Name: NF4478_low_5
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 49289837 - 49289450
Alignment:
| Q |
7 |
aatatcgccactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgt |
106 |
Q |
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| T |
49289837 |
aatatcaccactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgt |
49289742 |
T |
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| Q |
107 |
gtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggct |
206 |
Q |
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| T |
49289741 |
gtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggct |
49289642 |
T |
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| Q |
207 |
tgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttt |
306 |
Q |
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| T |
49289641 |
tgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttt |
49289542 |
T |
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| Q |
307 |
tactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagtcctttg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49289541 |
tactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagtcctttg |
49289450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 49296788 - 49296401
Alignment:
| Q |
7 |
aatatcgccactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgt |
106 |
Q |
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| T |
49296788 |
aatatcaccactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgt |
49296693 |
T |
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| Q |
107 |
gtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggct |
206 |
Q |
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| T |
49296692 |
gtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggct |
49296593 |
T |
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| Q |
207 |
tgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttt |
306 |
Q |
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| T |
49296592 |
tgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttt |
49296493 |
T |
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| Q |
307 |
tactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagtcctttg |
397 |
Q |
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| T |
49296492 |
tactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagtcctttg |
49296401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 49303518 - 49303232
Alignment:
| Q |
7 |
aatatcgccactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgt |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303518 |
aatatcaccactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgt |
49303423 |
T |
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| Q |
107 |
gtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49303422 |
gtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggct |
49303323 |
T |
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| Q |
207 |
tgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtc |
300 |
Q |
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| T |
49303322 |
t---gttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatcaattaagtc |
49303232 |
T |
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