View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4478_low_6 (Length: 389)
Name: NF4478_low_6
Description: NF4478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4478_low_6 |
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| [»] scaffold0088 (2 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 89 - 311
Target Start/End: Complemental strand, 46890 - 46668
Alignment:
| Q |
89 |
tatgtctcttatatcaaaaaccaacaaatttattttcttgagagagcgtataaatgtcatgtttaaagttaatgcaaatcaccaataacataaagtgttt |
188 |
Q |
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| T |
46890 |
tatgtctcttatatcaaaaaccaacaaatttatttttttgagagagcctataaatttcatgtttaaaattaatgcaaatcaccaataacgtaaagtgttt |
46791 |
T |
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| Q |
189 |
ataatgagtaaatatcatatccatttattaagaatgttctactataacattttggcaataacacattcagaaatataataacagtgttgcatgggtnnnn |
288 |
Q |
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| T |
46790 |
ataatgagtaaatatcatatccatttattaagaatgttctactataacattttggcaataacacattcagaaatataataacagtgttgcatggataaaa |
46691 |
T |
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| Q |
289 |
nnnttagatatcaatcactttac |
311 |
Q |
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| T |
46690 |
aaattagatatcaatcactttac |
46668 |
T |
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Target: scaffold0088; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 47005 - 46914
Alignment:
| Q |
10 |
caatatgaaagaatcattcatgtttattttcctatgtatgtgtgtttaaatgttttttattgtggctttgcccataaaa-tatgtctcttat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
47005 |
caatatcaaagaatcattcatgtttattttcctatgtatgtgtgtttaaatgttttttattgtggctttgtccgtaaaagtatgtctcttat |
46914 |
T |
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